miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 6839 0.68 0.344123
Target:  5'- cGGAGaaaGCAGGCUugcccucgccGUUGACGGUCuugGCCu -3'
miRNA:   3'- aCUUCg--CGUUCGA----------CGACUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 18778 0.69 0.335817
Target:  5'- --uGGUGC-AGUUGCUGcCcGCCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACuGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 14719 0.71 0.247603
Target:  5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3'
miRNA:   3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 13750 0.73 0.169861
Target:  5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3'
miRNA:   3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 41387 0.66 0.454838
Target:  5'- cGcGGCGaCAuGCUGCcGcCGGCCGUg -3'
miRNA:   3'- aCuUCGC-GUuCGACGaCuGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 6369 0.68 0.387837
Target:  5'- cGggGCGCuGGGUUaCaccagGuCGGCCGCCg -3'
miRNA:   3'- aCuuCGCG-UUCGAcGa----CuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 41466 0.7 0.2965
Target:  5'- aGuGGCuGCAAGCUGCcGugGGCacCGCg -3'
miRNA:   3'- aCuUCG-CGUUCGACGaCugCCG--GCGg -5'
26462 5' -57.7 NC_005357.1 + 2383 0.74 0.139802
Target:  5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3'
miRNA:   3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 29289 0.68 0.378807
Target:  5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3'
miRNA:   3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 16800 0.76 0.108329
Target:  5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3'
miRNA:   3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 2737 0.69 0.304068
Target:  5'- -uGAGCGCGGcccggcGCUGCUcgGGCGuGCCGaCCa -3'
miRNA:   3'- acUUCGCGUU------CGACGA--CUGC-CGGC-GG- -5'
26462 5' -57.7 NC_005357.1 + 34379 0.68 0.344123
Target:  5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3'
miRNA:   3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 16158 0.7 0.289079
Target:  5'- cGAuGCGCGAGCcgaccagGCcGGCGGgUGCCc -3'
miRNA:   3'- aCUuCGCGUUCGa------CGaCUGCCgGCGG- -5'
26462 5' -57.7 NC_005357.1 + 25485 0.71 0.254157
Target:  5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3'
miRNA:   3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5'
26462 5' -57.7 NC_005357.1 + 15686 0.72 0.211175
Target:  5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3'
miRNA:   3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 29355 0.73 0.174601
Target:  5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3'
miRNA:   3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 33825 0.66 0.48541
Target:  5'- aGAAGCGCAaccAGCUuauccaGCaccaGGCCGCa -3'
miRNA:   3'- aCUUCGCGU---UCGA------CGacugCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 6175 0.66 0.468979
Target:  5'- --cAGCGCAGGCcggucuUGCcgcagcguuugcaggUGACGGCgCGCg -3'
miRNA:   3'- acuUCGCGUUCG------ACG---------------ACUGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 38170 0.67 0.41576
Target:  5'- ----aUGCcGGC-GCUGACGGCCGgCa -3'
miRNA:   3'- acuucGCGuUCGaCGACUGCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 14624 0.67 0.406315
Target:  5'- ---cGCGCGAGgacgUGCUG-CGGCUGCg -3'
miRNA:   3'- acuuCGCGUUCg---ACGACuGCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.