miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 34192 1.12 0.000204
Target:  5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3'
miRNA:   3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 41466 0.7 0.2965
Target:  5'- aGuGGCuGCAAGCUGCcGugGGCacCGCg -3'
miRNA:   3'- aCuUCG-CGUUCGACGaCugCCG--GCGg -5'
26462 5' -57.7 NC_005357.1 + 18778 0.69 0.335817
Target:  5'- --uGGUGC-AGUUGCUGcCcGCCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACuGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 17120 0.66 0.506326
Target:  5'- -cGAGCGCcGGUgGCagGGcCGGCCGCa -3'
miRNA:   3'- acUUCGCGuUCGaCGa-CU-GCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 29355 0.73 0.174601
Target:  5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3'
miRNA:   3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 27825 0.73 0.184434
Target:  5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3'
miRNA:   3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 15686 0.72 0.211175
Target:  5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3'
miRNA:   3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 14920 0.71 0.228777
Target:  5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3'
miRNA:   3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 25485 0.71 0.254157
Target:  5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3'
miRNA:   3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5'
26462 5' -57.7 NC_005357.1 + 35804 0.7 0.289079
Target:  5'- -cAAGCGCGcGaaGCUGGCGGCggacuaCGCCa -3'
miRNA:   3'- acUUCGCGUuCgaCGACUGCCG------GCGG- -5'
26462 5' -57.7 NC_005357.1 + 5335 0.7 0.274676
Target:  5'- cGuGGCGCAGcauggcaucgcGCUGCg--UGGCCGCCu -3'
miRNA:   3'- aCuUCGCGUU-----------CGACGacuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 14719 0.71 0.247603
Target:  5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3'
miRNA:   3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 16800 0.76 0.108329
Target:  5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3'
miRNA:   3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 16158 0.7 0.289079
Target:  5'- cGAuGCGCGAGCcgaccagGCcGGCGGgUGCCc -3'
miRNA:   3'- aCUuCGCGUUCGa------CGaCUGCCgGCGG- -5'
26462 5' -57.7 NC_005357.1 + 2383 0.74 0.139802
Target:  5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3'
miRNA:   3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 22965 0.71 0.247603
Target:  5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3'
miRNA:   3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 21804 0.7 0.289079
Target:  5'- -cGAGCGCAGGCcgacaccgaccUGC-GACG-CCGCCu -3'
miRNA:   3'- acUUCGCGUUCG-----------ACGaCUGCcGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 2737 0.69 0.304068
Target:  5'- -uGAGCGCGGcccggcGCUGCUcgGGCGuGCCGaCCa -3'
miRNA:   3'- acUUCGCGUU------CGACGA--CUGC-CGGC-GG- -5'
26462 5' -57.7 NC_005357.1 + 13750 0.73 0.169861
Target:  5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3'
miRNA:   3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 23729 0.72 0.211175
Target:  5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3'
miRNA:   3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.