miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 5' -54.3 NC_005357.1 + 23764 0.66 0.639534
Target:  5'- gGCGCCaccggGCCGAU-GCGCCGcggcUACGAa -3'
miRNA:   3'- -CGCGG-----CGGCUAuCGCGGUaa--GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 19046 0.68 0.526733
Target:  5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3'
miRNA:   3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5'
26463 5' -54.3 NC_005357.1 + 25537 0.68 0.548873
Target:  5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3'
miRNA:   3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5'
26463 5' -54.3 NC_005357.1 + 15588 0.67 0.571294
Target:  5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3'
miRNA:   3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5'
26463 5' -54.3 NC_005357.1 + 10408 0.67 0.605304
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26463 5' -54.3 NC_005357.1 + 31533 0.67 0.605304
Target:  5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3'
miRNA:   3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 3609 0.67 0.605304
Target:  5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3'
miRNA:   3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5'
26463 5' -54.3 NC_005357.1 + 34884 0.67 0.628117
Target:  5'- gGCGCCGCgGAUcgAGCacgccGCCGagcgCACGGUa -3'
miRNA:   3'- -CGCGGCGgCUA--UCG-----CGGUaa--GUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 15767 0.66 0.639534
Target:  5'- uUGCCGCCaAUGGUGCgAcgCACGAc -3'
miRNA:   3'- cGCGGCGGcUAUCGCGgUaaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 34707 0.68 0.515789
Target:  5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3'
miRNA:   3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5'
26463 5' -54.3 NC_005357.1 + 12435 0.69 0.504937
Target:  5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3'
miRNA:   3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5'
26463 5' -54.3 NC_005357.1 + 6674 0.69 0.494184
Target:  5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3'
miRNA:   3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 3549 0.74 0.235563
Target:  5'- gGCGCCGCCGaAUAGCGCagca-GCGGg -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 25829 0.74 0.235563
Target:  5'- cGgGCCGCCGuUGGCGCCggUCAg--- -3'
miRNA:   3'- -CgCGGCGGCuAUCGCGGuaAGUguua -5'
26463 5' -54.3 NC_005357.1 + 18384 0.72 0.322835
Target:  5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3'
miRNA:   3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 23689 0.71 0.356847
Target:  5'- cGgGCCggacacguacagGCCGGUAGCGCCcaggUCGCGGg -3'
miRNA:   3'- -CgCGG------------CGGCUAUCGCGGua--AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 2993 0.71 0.365733
Target:  5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 37920 0.71 0.365733
Target:  5'- uGCGCCaagcGCCuGUGGCGCCGcgCGCAu- -3'
miRNA:   3'- -CGCGG----CGGcUAUCGCGGUaaGUGUua -5'
26463 5' -54.3 NC_005357.1 + 11592 0.7 0.412406
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26463 5' -54.3 NC_005357.1 + 7298 0.7 0.422173
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.