miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 5' -54.3 NC_005357.1 + 1127 0.67 0.604165
Target:  5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3'
miRNA:   3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5'
26463 5' -54.3 NC_005357.1 + 1160 0.69 0.473002
Target:  5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3'
miRNA:   3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5'
26463 5' -54.3 NC_005357.1 + 2111 0.73 0.298952
Target:  5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3'
miRNA:   3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 2153 0.66 0.685017
Target:  5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3'
miRNA:   3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 2993 0.71 0.365733
Target:  5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 3549 0.74 0.235563
Target:  5'- gGCGCCGCCGaAUAGCGCagca-GCGGg -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 3566 0.66 0.639534
Target:  5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3'
miRNA:   3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5'
26463 5' -54.3 NC_005357.1 + 3609 0.67 0.605304
Target:  5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3'
miRNA:   3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5'
26463 5' -54.3 NC_005357.1 + 4016 0.66 0.650945
Target:  5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3'
miRNA:   3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 4577 0.69 0.504937
Target:  5'- gGCGCUGCuCGGU-GCGCCAg--GCGAg -3'
miRNA:   3'- -CGCGGCG-GCUAuCGCGGUaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 5028 0.68 0.560053
Target:  5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3'
miRNA:   3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 6674 0.69 0.494184
Target:  5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3'
miRNA:   3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 7298 0.7 0.422173
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5'
26463 5' -54.3 NC_005357.1 + 8620 0.66 0.662337
Target:  5'- gGCGUgGCCGGUA-CGCCcUUCGgAAa -3'
miRNA:   3'- -CGCGgCGGCUAUcGCGGuAAGUgUUa -5'
26463 5' -54.3 NC_005357.1 + 8686 0.73 0.276461
Target:  5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3'
miRNA:   3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 9011 0.67 0.628117
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 9059 0.67 0.628117
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 9107 0.67 0.628117
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 9155 0.67 0.628117
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 9203 0.67 0.628117
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.