miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 5' -54.3 NC_005357.1 + 33530 1.09 0.00081
Target:  5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3'
miRNA:   3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 27828 0.76 0.194393
Target:  5'- cGCGCUGCCcgcGGUGGCGCCGgcCGCGc- -3'
miRNA:   3'- -CGCGGCGG---CUAUCGCGGUaaGUGUua -5'
26463 5' -54.3 NC_005357.1 + 19336 0.75 0.205469
Target:  5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3'
miRNA:   3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 25829 0.74 0.235563
Target:  5'- cGgGCCGCCGuUGGCGCCggUCAg--- -3'
miRNA:   3'- -CgCGGCGGCuAUCGCGGuaAGUguua -5'
26463 5' -54.3 NC_005357.1 + 3549 0.74 0.235563
Target:  5'- gGCGCCGCCGaAUAGCGCagca-GCGGg -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 42205 0.74 0.26223
Target:  5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3'
miRNA:   3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5'
26463 5' -54.3 NC_005357.1 + 8686 0.73 0.276461
Target:  5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3'
miRNA:   3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 15001 0.73 0.291301
Target:  5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3'
miRNA:   3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 2111 0.73 0.298952
Target:  5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3'
miRNA:   3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 18384 0.72 0.322835
Target:  5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3'
miRNA:   3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 23689 0.71 0.356847
Target:  5'- cGgGCCggacacguacagGCCGGUAGCGCCcaggUCGCGGg -3'
miRNA:   3'- -CgCGG------------CGGCUAUCGCGGua--AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 2993 0.71 0.365733
Target:  5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 37920 0.71 0.365733
Target:  5'- uGCGCCaagcGCCuGUGGCGCCGcgCGCAu- -3'
miRNA:   3'- -CGCGG----CGGcUAUCGCGGUaaGUGUua -5'
26463 5' -54.3 NC_005357.1 + 33233 0.71 0.374772
Target:  5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3'
miRNA:   3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5'
26463 5' -54.3 NC_005357.1 + 29812 0.71 0.38396
Target:  5'- aGCGauGCCGAgcgcgucGGCGCCAUgCGCAAa -3'
miRNA:   3'- -CGCggCGGCUa------UCGCGGUAaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 11592 0.7 0.412406
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26463 5' -54.3 NC_005357.1 + 7298 0.7 0.422173
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5'
26463 5' -54.3 NC_005357.1 + 1160 0.69 0.473002
Target:  5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3'
miRNA:   3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5'
26463 5' -54.3 NC_005357.1 + 27625 0.69 0.473002
Target:  5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3'
miRNA:   3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5'
26463 5' -54.3 NC_005357.1 + 40974 0.69 0.473002
Target:  5'- -gGCCGCCGAccGCGCCG-UCAa--- -3'
miRNA:   3'- cgCGGCGGCUauCGCGGUaAGUguua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.