Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26463 | 5' | -54.3 | NC_005357.1 | + | 33423 | 0.69 | 0.494184 |
Target: 5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3' miRNA: 3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 6674 | 0.69 | 0.494184 |
Target: 5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3' miRNA: 3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 12435 | 0.69 | 0.504937 |
Target: 5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3' miRNA: 3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 4577 | 0.69 | 0.504937 |
Target: 5'- gGCGCUGCuCGGU-GCGCCAg--GCGAg -3' miRNA: 3'- -CGCGGCG-GCUAuCGCGGUaagUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 34707 | 0.68 | 0.515789 |
Target: 5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3' miRNA: 3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 19046 | 0.68 | 0.526733 |
Target: 5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3' miRNA: 3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 18909 | 0.68 | 0.526733 |
Target: 5'- uGCGCCGCCugGAaGGCGCgc-UCGCGGa -3' miRNA: 3'- -CGCGGCGG--CUaUCGCGguaAGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 24041 | 0.68 | 0.537764 |
Target: 5'- -gGCCGCCaccGGCGCCAUcgGCAAg -3' miRNA: 3'- cgCGGCGGcuaUCGCGGUAagUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 41286 | 0.68 | 0.537764 |
Target: 5'- cCGCCGCCG-UAGCGCgAgcuaACGGUu -3' miRNA: 3'- cGCGGCGGCuAUCGCGgUaag-UGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 25537 | 0.68 | 0.548873 |
Target: 5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3' miRNA: 3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 15700 | 0.68 | 0.548873 |
Target: 5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3' miRNA: 3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 35348 | 0.68 | 0.548873 |
Target: 5'- cGCGCCGUgGGUAG-GCCGcggcgUCAUGAa -3' miRNA: 3'- -CGCGGCGgCUAUCgCGGUa----AGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 25669 | 0.68 | 0.548873 |
Target: 5'- aCGUCGCCGGUGGCuaCGccCACGAg -3' miRNA: 3'- cGCGGCGGCUAUCGcgGUaaGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 23971 | 0.68 | 0.548873 |
Target: 5'- aCGCCGCCG---GCGCCGcgaccgUCACGu- -3' miRNA: 3'- cGCGGCGGCuauCGCGGUa-----AGUGUua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 5028 | 0.68 | 0.560053 |
Target: 5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3' miRNA: 3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 21892 | 0.68 | 0.560053 |
Target: 5'- gGCGCCGCaucguGUGGCGCU-UUCugGAa -3' miRNA: 3'- -CGCGGCGgc---UAUCGCGGuAAGugUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 15588 | 0.67 | 0.571294 |
Target: 5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3' miRNA: 3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 37639 | 0.67 | 0.571294 |
Target: 5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3' miRNA: 3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 33203 | 0.67 | 0.58259 |
Target: 5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3' miRNA: 3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 1127 | 0.67 | 0.604165 |
Target: 5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3' miRNA: 3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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