Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26463 | 5' | -54.3 | NC_005357.1 | + | 34212 | 0.67 | 0.628117 |
Target: 5'- -gGCCGCCGAccAGCgcgacuacgagGCCGUgCGCGAUg -3' miRNA: 3'- cgCGGCGGCUa-UCG-----------CGGUAaGUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 9107 | 0.67 | 0.628117 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 9011 | 0.67 | 0.628117 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 9059 | 0.67 | 0.628117 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 9155 | 0.67 | 0.628117 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 9203 | 0.67 | 0.628117 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 34884 | 0.67 | 0.628117 |
Target: 5'- gGCGCCGCgGAUcgAGCacgccGCCGagcgCACGGUa -3' miRNA: 3'- -CGCGGCGgCUA--UCG-----CGGUaa--GUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 25608 | 0.67 | 0.616703 |
Target: 5'- uGCGCCGCgUGAacuGCGCCGccugggCGCGAc -3' miRNA: 3'- -CGCGGCG-GCUau-CGCGGUaa----GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 16824 | 0.67 | 0.605304 |
Target: 5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3' miRNA: 3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 10408 | 0.67 | 0.605304 |
Target: 5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3' miRNA: 3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 31533 | 0.67 | 0.605304 |
Target: 5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3' miRNA: 3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 3609 | 0.67 | 0.605304 |
Target: 5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3' miRNA: 3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 1127 | 0.67 | 0.604165 |
Target: 5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3' miRNA: 3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 33203 | 0.67 | 0.58259 |
Target: 5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3' miRNA: 3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 37639 | 0.67 | 0.571294 |
Target: 5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3' miRNA: 3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 15588 | 0.67 | 0.571294 |
Target: 5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3' miRNA: 3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 21892 | 0.68 | 0.560053 |
Target: 5'- gGCGCCGCaucguGUGGCGCU-UUCugGAa -3' miRNA: 3'- -CGCGGCGgc---UAUCGCGGuAAGugUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 5028 | 0.68 | 0.560053 |
Target: 5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3' miRNA: 3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 25537 | 0.68 | 0.548873 |
Target: 5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3' miRNA: 3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5' |
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26463 | 5' | -54.3 | NC_005357.1 | + | 25669 | 0.68 | 0.548873 |
Target: 5'- aCGUCGCCGGUGGCuaCGccCACGAg -3' miRNA: 3'- cGCGGCGGCUAUCGcgGUaaGUGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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