miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 5' -54.3 NC_005357.1 + 10408 0.67 0.605304
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26463 5' -54.3 NC_005357.1 + 11592 0.7 0.412406
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26463 5' -54.3 NC_005357.1 + 12435 0.69 0.504937
Target:  5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3'
miRNA:   3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5'
26463 5' -54.3 NC_005357.1 + 13889 0.66 0.685017
Target:  5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3'
miRNA:   3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5'
26463 5' -54.3 NC_005357.1 + 14849 0.66 0.639534
Target:  5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3'
miRNA:   3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5'
26463 5' -54.3 NC_005357.1 + 15001 0.73 0.291301
Target:  5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3'
miRNA:   3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 15431 0.66 0.639534
Target:  5'- cGCGCCGCUG-UAGCcCCAguucUUGCAGc -3'
miRNA:   3'- -CGCGGCGGCuAUCGcGGUa---AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 15588 0.67 0.571294
Target:  5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3'
miRNA:   3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5'
26463 5' -54.3 NC_005357.1 + 15700 0.68 0.548873
Target:  5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 15767 0.66 0.639534
Target:  5'- uUGCCGCCaAUGGUGCgAcgCACGAc -3'
miRNA:   3'- cGCGGCGGcUAUCGCGgUaaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 16070 0.66 0.662337
Target:  5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3'
miRNA:   3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5'
26463 5' -54.3 NC_005357.1 + 16824 0.67 0.605304
Target:  5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3'
miRNA:   3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 17122 0.66 0.639534
Target:  5'- aGCGCCGgUGGcAGgGCCGgccgCACGAc -3'
miRNA:   3'- -CGCGGCgGCUaUCgCGGUaa--GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 17205 0.66 0.673698
Target:  5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3'
miRNA:   3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 18384 0.72 0.322835
Target:  5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3'
miRNA:   3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 18668 0.66 0.685017
Target:  5'- gGCGCaucgGcCCGGUGGCGCCGgcauggCGCu-- -3'
miRNA:   3'- -CGCGg---C-GGCUAUCGCGGUaa----GUGuua -5'
26463 5' -54.3 NC_005357.1 + 18909 0.68 0.526733
Target:  5'- uGCGCCGCCugGAaGGCGCgc-UCGCGGa -3'
miRNA:   3'- -CGCGGCGG--CUaUCGCGguaAGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 19046 0.68 0.526733
Target:  5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3'
miRNA:   3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5'
26463 5' -54.3 NC_005357.1 + 19336 0.75 0.205469
Target:  5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3'
miRNA:   3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5'
26463 5' -54.3 NC_005357.1 + 21892 0.68 0.560053
Target:  5'- gGCGCCGCaucguGUGGCGCU-UUCugGAa -3'
miRNA:   3'- -CGCGGCGgc---UAUCGCGGuAAGugUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.