miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 5' -54.3 NC_005357.1 + 42205 0.74 0.26223
Target:  5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3'
miRNA:   3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5'
26463 5' -54.3 NC_005357.1 + 42033 0.66 0.662337
Target:  5'- cGUGCUGCUGGUGGgCGCCcUggGCAu- -3'
miRNA:   3'- -CGCGGCGGCUAUC-GCGGuAagUGUua -5'
26463 5' -54.3 NC_005357.1 + 41756 0.66 0.685017
Target:  5'- gGCGCCGCCGuaGGCgGCCuggUgGCu-- -3'
miRNA:   3'- -CGCGGCGGCuaUCG-CGGua-AgUGuua -5'
26463 5' -54.3 NC_005357.1 + 41286 0.68 0.537764
Target:  5'- cCGCCGCCG-UAGCGCgAgcuaACGGUu -3'
miRNA:   3'- cGCGGCGGCuAUCGCGgUaag-UGUUA- -5'
26463 5' -54.3 NC_005357.1 + 40974 0.69 0.473002
Target:  5'- -gGCCGCCGAccGCGCCG-UCAa--- -3'
miRNA:   3'- cgCGGCGGCUauCGCGGUaAGUguua -5'
26463 5' -54.3 NC_005357.1 + 38862 0.66 0.673698
Target:  5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3'
miRNA:   3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5'
26463 5' -54.3 NC_005357.1 + 37920 0.71 0.365733
Target:  5'- uGCGCCaagcGCCuGUGGCGCCGcgCGCAu- -3'
miRNA:   3'- -CGCGG----CGGcUAUCGCGGUaaGUGUua -5'
26463 5' -54.3 NC_005357.1 + 37639 0.67 0.571294
Target:  5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3'
miRNA:   3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 35348 0.68 0.548873
Target:  5'- cGCGCCGUgGGUAG-GCCGcggcgUCAUGAa -3'
miRNA:   3'- -CGCGGCGgCUAUCgCGGUa----AGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 34884 0.67 0.628117
Target:  5'- gGCGCCGCgGAUcgAGCacgccGCCGagcgCACGGUa -3'
miRNA:   3'- -CGCGGCGgCUA--UCG-----CGGUaa--GUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 34707 0.68 0.515789
Target:  5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3'
miRNA:   3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5'
26463 5' -54.3 NC_005357.1 + 34212 0.67 0.628117
Target:  5'- -gGCCGCCGAccAGCgcgacuacgagGCCGUgCGCGAUg -3'
miRNA:   3'- cgCGGCGGCUa-UCG-----------CGGUAaGUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 33530 1.09 0.00081
Target:  5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3'
miRNA:   3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5'
26463 5' -54.3 NC_005357.1 + 33423 0.69 0.494184
Target:  5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3'
miRNA:   3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5'
26463 5' -54.3 NC_005357.1 + 33233 0.71 0.374772
Target:  5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3'
miRNA:   3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5'
26463 5' -54.3 NC_005357.1 + 33203 0.67 0.58259
Target:  5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3'
miRNA:   3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5'
26463 5' -54.3 NC_005357.1 + 31533 0.67 0.605304
Target:  5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3'
miRNA:   3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 29812 0.71 0.38396
Target:  5'- aGCGauGCCGAgcgcgucGGCGCCAUgCGCAAa -3'
miRNA:   3'- -CGCggCGGCUa------UCGCGGUAaGUGUUa -5'
26463 5' -54.3 NC_005357.1 + 27828 0.76 0.194393
Target:  5'- cGCGCUGCCcgcGGUGGCGCCGgcCGCGc- -3'
miRNA:   3'- -CGCGGCGG---CUAUCGCGGUaaGUGUua -5'
26463 5' -54.3 NC_005357.1 + 27625 0.69 0.473002
Target:  5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3'
miRNA:   3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.