Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26465 | 3' | -56.9 | NC_005357.1 | + | 14969 | 0.67 | 0.465431 |
Target: 5'- uGGCGG--CGCGCUGGCauaccagcgcCAGGGCc -3' miRNA: 3'- -UCGUCuaGCGUGACCGgcuu------GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8386 | 0.67 | 0.459354 |
Target: 5'- cGGCc--UCGCGCUGGCugcguagccaguCGGcCAGGGCc -3' miRNA: 3'- -UCGucuAGCGUGACCG------------GCUuGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 37843 | 0.67 | 0.459354 |
Target: 5'- gAGCAGuuccUCGC-CUGGCgcacCGAGCAGcgccucGGCg -3' miRNA: 3'- -UCGUCu---AGCGuGACCG----GCUUGUC------CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 16018 | 0.67 | 0.456331 |
Target: 5'- gGGCAuGAguuacgcCGUGCUGGCCGAGaaguucgagcagucCAaGGGCg -3' miRNA: 3'- -UCGU-CUa------GCGUGACCGGCUU--------------GU-CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 40456 | 0.67 | 0.44932 |
Target: 5'- uGGCAGGUgGCGC---CCGuaucGCGGGGCa -3' miRNA: 3'- -UCGUCUAgCGUGaccGGCu---UGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 24251 | 0.67 | 0.448324 |
Target: 5'- cAGCAuggaaguGAUCGCACUGa---AACAGGGCu -3' miRNA: 3'- -UCGU-------CUAGCGUGACcggcUUGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8714 | 0.68 | 0.439409 |
Target: 5'- gGGuCGGAugUCGCGCaccuUGaGCCGGGacacCAGGGCg -3' miRNA: 3'- -UC-GUCU--AGCGUG----AC-CGGCUU----GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 5810 | 0.68 | 0.439409 |
Target: 5'- gGGUAGAagcCGCcCUGGuuGGuCAGGGUu -3' miRNA: 3'- -UCGUCUa--GCGuGACCggCUuGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 4427 | 0.68 | 0.410444 |
Target: 5'- cGUAGGUCGUACccGGCCGcAACAccgccaGGCg -3' miRNA: 3'- uCGUCUAGCGUGa-CCGGC-UUGUc-----CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9401 | 0.68 | 0.410444 |
Target: 5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3' miRNA: 3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9881 | 0.68 | 0.406672 |
Target: 5'- gAGCGGcAUCGCcggcggcagcaucCUGGCCGGcaucaccagccuGCAcGGGCg -3' miRNA: 3'- -UCGUC-UAGCGu------------GACCGGCU------------UGU-CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 19586 | 0.68 | 0.401056 |
Target: 5'- cGCAGcgCGCGCUgucGGCUGucgGCAGcgcGGCg -3' miRNA: 3'- uCGUCuaGCGUGA---CCGGCu--UGUC---CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 40883 | 0.68 | 0.400125 |
Target: 5'- gAGCGGuUCG-GCUuuaccaaGGCCGAACugcuGGGCg -3' miRNA: 3'- -UCGUCuAGCgUGA-------CCGGCUUGu---CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 20300 | 0.68 | 0.391806 |
Target: 5'- uAGCGGGUUGCuCggcGGCCGGuuGCGaugcGGGCu -3' miRNA: 3'- -UCGUCUAGCGuGa--CCGGCU--UGU----CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 39779 | 0.69 | 0.373728 |
Target: 5'- cGCaAGAccUCGCACggcaaGcGCCGGACguGGGGCu -3' miRNA: 3'- uCG-UCU--AGCGUGa----C-CGGCUUG--UCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 17670 | 0.69 | 0.364903 |
Target: 5'- uGGCAGGUCauuccgacaGCAUgggucgaGGCCGcGCAGGcGCg -3' miRNA: 3'- -UCGUCUAG---------CGUGa------CCGGCuUGUCC-CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 25755 | 0.69 | 0.34769 |
Target: 5'- cGCuGggCGCGCU-GCUGGGCGGcGGCa -3' miRNA: 3'- uCGuCuaGCGUGAcCGGCUUGUC-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 26233 | 0.69 | 0.339304 |
Target: 5'- cGCAGuuuugCGCGCgucGCCGAagGCAcGGGCa -3' miRNA: 3'- uCGUCua---GCGUGac-CGGCU--UGU-CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 1088 | 0.7 | 0.315033 |
Target: 5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3' miRNA: 3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 15693 | 0.7 | 0.315033 |
Target: 5'- cAGCGGG-CGCGCUGGCgGuGGCccGGCu -3' miRNA: 3'- -UCGUCUaGCGUGACCGgC-UUGucCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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