Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26468 | 3' | -61.9 | NC_005357.1 | + | 37820 | 0.66 | 0.314348 |
Target: 5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3' miRNA: 3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 15459 | 0.66 | 0.306861 |
Target: 5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3' miRNA: 3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 7557 | 0.66 | 0.329732 |
Target: 5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3' miRNA: 3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 25349 | 0.66 | 0.33763 |
Target: 5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3' miRNA: 3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 26982 | 0.66 | 0.33763 |
Target: 5'- -aGCCGACCGAcGCUGCaagaacuGGGGCUa -3' miRNA: 3'- cgCGGCUGGCUuCGGUGcg-----UCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 22836 | 0.66 | 0.329732 |
Target: 5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3' miRNA: 3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 2762 | 0.67 | 0.276229 |
Target: 5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3' miRNA: 3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 17681 | 0.67 | 0.258273 |
Target: 5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3' miRNA: 3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 33233 | 0.67 | 0.26481 |
Target: 5'- cGCGCCG-CCGAgcaGGCCaACGUcgacGGcGCCa -3' miRNA: 3'- -CGCGGCuGGCU---UCGG-UGCGu---CC-CGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 36043 | 0.67 | 0.275547 |
Target: 5'- cGgGCCGGCCGGccugcgccugauuGCCgACGU-GGGCCg -3' miRNA: 3'- -CgCGGCUGGCUu------------CGG-UGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 37321 | 0.67 | 0.2923 |
Target: 5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3' miRNA: 3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 18263 | 0.67 | 0.258273 |
Target: 5'- aCGCCGAagcgCGcAGCCgucgagGCGCuGGGCCa -3' miRNA: 3'- cGCGGCUg---GCuUCGG------UGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 14725 | 0.67 | 0.27148 |
Target: 5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3' miRNA: 3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 13052 | 0.67 | 0.27148 |
Target: 5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3' miRNA: 3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 402 | 0.67 | 0.258273 |
Target: 5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3' miRNA: 3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 28109 | 0.67 | 0.258273 |
Target: 5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3' miRNA: 3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 18082 | 0.67 | 0.258273 |
Target: 5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3' miRNA: 3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8984 | 0.67 | 0.278285 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8937 | 0.67 | 0.278285 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 850 | 0.67 | 0.277598 |
Target: 5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3' miRNA: 3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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