miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 30219 0.7 0.175366
Target:  5'- uGCGucCCGACCaGggGCaggcaGCGC-GGGCCg -3'
miRNA:   3'- -CGC--GGCUGG-CuuCGg----UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 23753 0.7 0.180063
Target:  5'- aGCGCCauGCCGgcGCCAC-C-GGGCCg -3'
miRNA:   3'- -CGCGGc-UGGCuuCGGUGcGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 26292 0.7 0.180063
Target:  5'- aGCGUgCGGCCGcAGuCCuACGuCGGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGCuUC-GG-UGC-GUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 34986 0.69 0.184872
Target:  5'- cGCGCgaaGGCCGAAGCCGaacUGCu-GGCCg -3'
miRNA:   3'- -CGCGg--CUGGCUUCGGU---GCGucCCGGa -5'
26468 3' -61.9 NC_005357.1 + 19059 0.69 0.188305
Target:  5'- gGCGUCGaucagcguguccucGCCGAGGUCACGCGauugcaGGCCg -3'
miRNA:   3'- -CGCGGC--------------UGGCUUCGGUGCGUc-----CCGGa -5'
26468 3' -61.9 NC_005357.1 + 10760 0.69 0.189793
Target:  5'- cGCGCuCGACUucGGCC-CGCAGuucuucGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGcuUCGGuGCGUC------CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 38662 0.69 0.189793
Target:  5'- -gGCaCGACCGAGGCUACGUccAGcGGCg- -3'
miRNA:   3'- cgCG-GCUGGCUUCGGUGCG--UC-CCGga -5'
26468 3' -61.9 NC_005357.1 + 18705 0.69 0.205254
Target:  5'- cGCGCC-ACCGAGGCaCugGCccgcgaccuGGGCgCUa -3'
miRNA:   3'- -CGCGGcUGGCUUCG-GugCGu--------CCCG-GA- -5'
26468 3' -61.9 NC_005357.1 + 6549 0.69 0.205254
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 3870 0.69 0.210645
Target:  5'- gGCGCCGucGCUGuAGGCCGCGCu--GCCg -3'
miRNA:   3'- -CGCGGC--UGGC-UUCGGUGCGuccCGGa -5'
26468 3' -61.9 NC_005357.1 + 692 0.68 0.221793
Target:  5'- gGCGCCGGCCG-GGCCGCccaagauaccGCccaggauaGGGGCg- -3'
miRNA:   3'- -CGCGGCUGGCuUCGGUG----------CG--------UCCCGga -5'
26468 3' -61.9 NC_005357.1 + 12995 0.68 0.227553
Target:  5'- cCGCCcGCCGuucucguacAGGCCGCGCAGcgcaguggcgacGGCCUc -3'
miRNA:   3'- cGCGGcUGGC---------UUCGGUGCGUC------------CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 18884 0.68 0.233439
Target:  5'- aUGUCGGCCGAGGCCAucgacCGCGuGcGCCg -3'
miRNA:   3'- cGCGGCUGGCUUCGGU-----GCGUcC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 13164 0.68 0.239453
Target:  5'- aUGUCGGCCaGugucGGCCGCGCuGGGCg- -3'
miRNA:   3'- cGCGGCUGG-Cu---UCGGUGCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 31707 0.68 0.239453
Target:  5'- cCGCCuGACCagcccGCCGCGCGcGGGCUUu -3'
miRNA:   3'- cGCGG-CUGGcuu--CGGUGCGU-CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 16584 0.68 0.239453
Target:  5'- cGCGCCGGaCGAGGCCgaccACGCGaugguguuGGcGCCg -3'
miRNA:   3'- -CGCGGCUgGCUUCGG----UGCGU--------CC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 37797 0.68 0.239453
Target:  5'- uUGCCGACCcugcGGCaGCGC-GGGCCa -3'
miRNA:   3'- cGCGGCUGGcu--UCGgUGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 14596 0.68 0.239453
Target:  5'- gGCG-CGGCCGgcGCCAcCGC-GGGCa- -3'
miRNA:   3'- -CGCgGCUGGCuuCGGU-GCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 497 0.68 0.245596
Target:  5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3'
miRNA:   3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 13347 0.68 0.251869
Target:  5'- uCGCCG-CCGAAGUCGCGCAauuGcuucuggaaauaGGCCa -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---C------------CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.