miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26470 3' -62.8 NC_005357.1 + 30907 1.08 0.00014
Target:  5'- cCGCUCGCAGGGCCUCACGCCAGCGCAg -3'
miRNA:   3'- -GCGAGCGUCCCGGAGUGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 10932 0.78 0.033847
Target:  5'- gGUUUGCAGGGCCUCGgGCaguuGCGCGg -3'
miRNA:   3'- gCGAGCGUCCCGGAGUgCGgu--CGCGU- -5'
26470 3' -62.8 NC_005357.1 + 21679 0.74 0.071064
Target:  5'- gCGCggCGCAGcGCCUCuacgGCGCCAGCaGCAu -3'
miRNA:   3'- -GCGa-GCGUCcCGGAG----UGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 11192 0.74 0.073096
Target:  5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3'
miRNA:   3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5'
26470 3' -62.8 NC_005357.1 + 8376 0.72 0.094066
Target:  5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3'
miRNA:   3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 30435 0.72 0.096721
Target:  5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3'
miRNA:   3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5'
26470 3' -62.8 NC_005357.1 + 8424 0.71 0.114195
Target:  5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3'
miRNA:   3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 8279 0.71 0.11738
Target:  5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3'
miRNA:   3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5'
26470 3' -62.8 NC_005357.1 + 37118 0.71 0.127439
Target:  5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3'
miRNA:   3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5'
26470 3' -62.8 NC_005357.1 + 12134 0.7 0.144812
Target:  5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3'
miRNA:   3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 26699 0.7 0.149986
Target:  5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3'
miRNA:   3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5'
26470 3' -62.8 NC_005357.1 + 22938 0.69 0.154079
Target:  5'- gGUUCGCAGcGGCCUgccaccggCAC-CUGGCGCAa -3'
miRNA:   3'- gCGAGCGUC-CCGGA--------GUGcGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 27445 0.69 0.154079
Target:  5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3'
miRNA:   3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 34323 0.69 0.162572
Target:  5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3'
miRNA:   3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5'
26470 3' -62.8 NC_005357.1 + 31658 0.69 0.166975
Target:  5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3'
miRNA:   3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5'
26470 3' -62.8 NC_005357.1 + 29742 0.69 0.171484
Target:  5'- gGCUaucaagGC-GGGCCUCgacacGCGCCuGCGCAu -3'
miRNA:   3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 3715 0.69 0.171484
Target:  5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3'
miRNA:   3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5'
26470 3' -62.8 NC_005357.1 + 26728 0.68 0.190624
Target:  5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3'
miRNA:   3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 18075 0.68 0.190624
Target:  5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3'
miRNA:   3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 6231 0.68 0.190624
Target:  5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3'
miRNA:   3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.