Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 10932 | 0.78 | 0.033847 |
Target: 5'- gGUUUGCAGGGCCUCGgGCaguuGCGCGg -3' miRNA: 3'- gCGAGCGUCCCGGAGUgCGgu--CGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 18049 | 0.68 | 0.206186 |
Target: 5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3' miRNA: 3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 12549 | 0.67 | 0.217163 |
Target: 5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3' miRNA: 3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 31720 | 0.67 | 0.217163 |
Target: 5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3' miRNA: 3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 6730 | 0.67 | 0.222837 |
Target: 5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3' miRNA: 3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 28648 | 0.67 | 0.246177 |
Target: 5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3' miRNA: 3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 16057 | 0.66 | 0.253117 |
Target: 5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3' miRNA: 3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 33968 | 0.66 | 0.279713 |
Target: 5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3' miRNA: 3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 16425 | 0.66 | 0.279713 |
Target: 5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3' miRNA: 3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 25926 | 0.68 | 0.195693 |
Target: 5'- aGCUUGCGGuGGCCcagCAUGuCCcGCGCu -3' miRNA: 3'- gCGAGCGUC-CCGGa--GUGC-GGuCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 26728 | 0.68 | 0.190624 |
Target: 5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3' miRNA: 3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 8376 | 0.72 | 0.094066 |
Target: 5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3' miRNA: 3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 30435 | 0.72 | 0.096721 |
Target: 5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3' miRNA: 3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 37118 | 0.71 | 0.127439 |
Target: 5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3' miRNA: 3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 27445 | 0.69 | 0.154079 |
Target: 5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3' miRNA: 3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 31658 | 0.69 | 0.166975 |
Target: 5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3' miRNA: 3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 3715 | 0.69 | 0.171484 |
Target: 5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3' miRNA: 3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 6231 | 0.68 | 0.190624 |
Target: 5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3' miRNA: 3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 18075 | 0.68 | 0.190624 |
Target: 5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3' miRNA: 3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 9760 | 0.66 | 0.286701 |
Target: 5'- uGCUC---GGGCUUCACGUCGG-GCAg -3' miRNA: 3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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