Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 11192 | 0.74 | 0.073096 |
Target: 5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3' miRNA: 3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 40031 | 0.66 | 0.253117 |
Target: 5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3' miRNA: 3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 2830 | 0.66 | 0.259565 |
Target: 5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3' miRNA: 3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 9760 | 0.66 | 0.286701 |
Target: 5'- uGCUC---GGGCUUCACGUCGG-GCAg -3' miRNA: 3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 26699 | 0.7 | 0.149986 |
Target: 5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3' miRNA: 3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 22938 | 0.69 | 0.154079 |
Target: 5'- gGUUCGCAGcGGCCUgccaccggCAC-CUGGCGCAa -3' miRNA: 3'- gCGAGCGUC-CCGGA--------GUGcGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 29742 | 0.69 | 0.171484 |
Target: 5'- gGCUaucaagGC-GGGCCUCgacacGCGCCuGCGCAu -3' miRNA: 3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 21040 | 0.68 | 0.195693 |
Target: 5'- uGCUCGCGcaGGCCcagCGCGCCAuUGCGa -3' miRNA: 3'- gCGAGCGUc-CCGGa--GUGCGGUcGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 30907 | 1.08 | 0.00014 |
Target: 5'- cCGCUCGCAGGGCCUCACGCCAGCGCAg -3' miRNA: 3'- -GCGAGCGUCCCGGAGUGCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 7049 | 0.66 | 0.253117 |
Target: 5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3' miRNA: 3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 4813 | 0.67 | 0.246801 |
Target: 5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3' miRNA: 3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 23191 | 0.67 | 0.246801 |
Target: 5'- aGUUCau-GGGCCUgACGCC-GCGCu -3' miRNA: 3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 8424 | 0.71 | 0.114195 |
Target: 5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3' miRNA: 3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 32545 | 0.67 | 0.246801 |
Target: 5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3' miRNA: 3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 8279 | 0.71 | 0.11738 |
Target: 5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3' miRNA: 3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 14976 | 0.67 | 0.228636 |
Target: 5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3' miRNA: 3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 34635 | 0.67 | 0.246801 |
Target: 5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3' miRNA: 3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 26539 | 0.66 | 0.258914 |
Target: 5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3' miRNA: 3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 12134 | 0.7 | 0.144812 |
Target: 5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3' miRNA: 3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5' |
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26470 | 3' | -62.8 | NC_005357.1 | + | 34323 | 0.69 | 0.162572 |
Target: 5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3' miRNA: 3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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