miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26470 3' -62.8 NC_005357.1 + 2830 0.66 0.259565
Target:  5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3'
miRNA:   3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 3715 0.69 0.171484
Target:  5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3'
miRNA:   3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5'
26470 3' -62.8 NC_005357.1 + 4813 0.67 0.246801
Target:  5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3'
miRNA:   3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 6231 0.68 0.190624
Target:  5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3'
miRNA:   3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 6730 0.67 0.222837
Target:  5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3'
miRNA:   3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5'
26470 3' -62.8 NC_005357.1 + 7049 0.66 0.253117
Target:  5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3'
miRNA:   3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 8279 0.71 0.11738
Target:  5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3'
miRNA:   3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5'
26470 3' -62.8 NC_005357.1 + 8376 0.72 0.094066
Target:  5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3'
miRNA:   3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 8424 0.71 0.114195
Target:  5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3'
miRNA:   3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 9760 0.66 0.286701
Target:  5'- uGCUC---GGGCUUCACGUCGG-GCAg -3'
miRNA:   3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5'
26470 3' -62.8 NC_005357.1 + 10932 0.78 0.033847
Target:  5'- gGUUUGCAGGGCCUCGgGCaguuGCGCGg -3'
miRNA:   3'- gCGAGCGUCCCGGAGUgCGgu--CGCGU- -5'
26470 3' -62.8 NC_005357.1 + 11192 0.74 0.073096
Target:  5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3'
miRNA:   3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5'
26470 3' -62.8 NC_005357.1 + 12134 0.7 0.144812
Target:  5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3'
miRNA:   3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 12549 0.67 0.217163
Target:  5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3'
miRNA:   3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 14976 0.67 0.228636
Target:  5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3'
miRNA:   3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 16057 0.66 0.253117
Target:  5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3'
miRNA:   3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 16425 0.66 0.279713
Target:  5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3'
miRNA:   3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 18049 0.68 0.206186
Target:  5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3'
miRNA:   3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 18075 0.68 0.190624
Target:  5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3'
miRNA:   3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 21040 0.68 0.195693
Target:  5'- uGCUCGCGcaGGCCcagCGCGCCAuUGCGa -3'
miRNA:   3'- gCGAGCGUc-CCGGa--GUGCGGUcGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.