miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26470 3' -62.8 NC_005357.1 + 21679 0.74 0.071064
Target:  5'- gCGCggCGCAGcGCCUCuacgGCGCCAGCaGCAu -3'
miRNA:   3'- -GCGa-GCGUCcCGGAG----UGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 22938 0.69 0.154079
Target:  5'- gGUUCGCAGcGGCCUgccaccggCAC-CUGGCGCAa -3'
miRNA:   3'- gCGAGCGUC-CCGGA--------GUGcGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 23191 0.67 0.246801
Target:  5'- aGUUCau-GGGCCUgACGCC-GCGCu -3'
miRNA:   3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5'
26470 3' -62.8 NC_005357.1 + 24996 0.66 0.265482
Target:  5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3'
miRNA:   3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 25926 0.68 0.195693
Target:  5'- aGCUUGCGGuGGCCcagCAUGuCCcGCGCu -3'
miRNA:   3'- gCGAGCGUC-CCGGa--GUGC-GGuCGCGu -5'
26470 3' -62.8 NC_005357.1 + 26539 0.66 0.258914
Target:  5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3'
miRNA:   3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 26699 0.7 0.149986
Target:  5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3'
miRNA:   3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5'
26470 3' -62.8 NC_005357.1 + 26728 0.68 0.190624
Target:  5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3'
miRNA:   3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 27445 0.69 0.154079
Target:  5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3'
miRNA:   3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 28648 0.67 0.246177
Target:  5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3'
miRNA:   3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 29742 0.69 0.171484
Target:  5'- gGCUaucaagGC-GGGCCUCgacacGCGCCuGCGCAu -3'
miRNA:   3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 30435 0.72 0.096721
Target:  5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3'
miRNA:   3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5'
26470 3' -62.8 NC_005357.1 + 30907 1.08 0.00014
Target:  5'- cCGCUCGCAGGGCCUCACGCCAGCGCAg -3'
miRNA:   3'- -GCGAGCGUCCCGGAGUGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 31658 0.69 0.166975
Target:  5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3'
miRNA:   3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5'
26470 3' -62.8 NC_005357.1 + 31720 0.67 0.217163
Target:  5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3'
miRNA:   3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5'
26470 3' -62.8 NC_005357.1 + 32545 0.67 0.246801
Target:  5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3'
miRNA:   3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 33968 0.66 0.279713
Target:  5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3'
miRNA:   3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5'
26470 3' -62.8 NC_005357.1 + 34323 0.69 0.162572
Target:  5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3'
miRNA:   3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5'
26470 3' -62.8 NC_005357.1 + 34635 0.67 0.246801
Target:  5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3'
miRNA:   3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 37118 0.71 0.127439
Target:  5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3'
miRNA:   3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.