miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26470 3' -62.8 NC_005357.1 + 4813 0.67 0.246801
Target:  5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3'
miRNA:   3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 32545 0.67 0.246801
Target:  5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3'
miRNA:   3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 34635 0.67 0.246801
Target:  5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3'
miRNA:   3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 7049 0.66 0.253117
Target:  5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3'
miRNA:   3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 40031 0.66 0.253117
Target:  5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3'
miRNA:   3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 26539 0.66 0.258914
Target:  5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3'
miRNA:   3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 2830 0.66 0.259565
Target:  5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3'
miRNA:   3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 24996 0.66 0.265482
Target:  5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3'
miRNA:   3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5'
26470 3' -62.8 NC_005357.1 + 38917 0.66 0.272862
Target:  5'- uCGCUC-CGGGuuCUCGCGCU-GCGCu -3'
miRNA:   3'- -GCGAGcGUCCcgGAGUGCGGuCGCGu -5'
26470 3' -62.8 NC_005357.1 + 14976 0.67 0.228636
Target:  5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3'
miRNA:   3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 21040 0.68 0.195693
Target:  5'- uGCUCGCGcaGGCCcagCGCGCCAuUGCGa -3'
miRNA:   3'- gCGAGCGUc-CCGGa--GUGCGGUcGCGU- -5'
26470 3' -62.8 NC_005357.1 + 21679 0.74 0.071064
Target:  5'- gCGCggCGCAGcGCCUCuacgGCGCCAGCaGCAu -3'
miRNA:   3'- -GCGa-GCGUCcCGGAG----UGCGGUCG-CGU- -5'
26470 3' -62.8 NC_005357.1 + 11192 0.74 0.073096
Target:  5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3'
miRNA:   3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5'
26470 3' -62.8 NC_005357.1 + 8424 0.71 0.114195
Target:  5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3'
miRNA:   3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 8279 0.71 0.11738
Target:  5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3'
miRNA:   3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5'
26470 3' -62.8 NC_005357.1 + 12134 0.7 0.144812
Target:  5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3'
miRNA:   3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 26699 0.7 0.149986
Target:  5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3'
miRNA:   3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5'
26470 3' -62.8 NC_005357.1 + 22938 0.69 0.154079
Target:  5'- gGUUCGCAGcGGCCUgccaccggCAC-CUGGCGCAa -3'
miRNA:   3'- gCGAGCGUC-CCGGA--------GUGcGGUCGCGU- -5'
26470 3' -62.8 NC_005357.1 + 34323 0.69 0.162572
Target:  5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3'
miRNA:   3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5'
26470 3' -62.8 NC_005357.1 + 29742 0.69 0.171484
Target:  5'- gGCUaucaagGC-GGGCCUCgacacGCGCCuGCGCAu -3'
miRNA:   3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.