Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 21040 | 0.68 | 0.195693 |
Target: 5'- uGCUCGCGcaGGCCcagCGCGCCAuUGCGa -3' miRNA: 3'- gCGAGCGUc-CCGGa--GUGCGGUcGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 25926 | 0.68 | 0.195693 |
Target: 5'- aGCUUGCGGuGGCCcagCAUGuCCcGCGCu -3' miRNA: 3'- gCGAGCGUC-CCGGa--GUGC-GGuCGCGu -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 26728 | 0.68 | 0.190624 |
Target: 5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3' miRNA: 3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 18075 | 0.68 | 0.190624 |
Target: 5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3' miRNA: 3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 6231 | 0.68 | 0.190624 |
Target: 5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3' miRNA: 3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 3715 | 0.69 | 0.171484 |
Target: 5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3' miRNA: 3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 29742 | 0.69 | 0.171484 |
Target: 5'- gGCUaucaagGC-GGGCCUCgacacGCGCCuGCGCAu -3' miRNA: 3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 31658 | 0.69 | 0.166975 |
Target: 5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3' miRNA: 3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 34323 | 0.69 | 0.162572 |
Target: 5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3' miRNA: 3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 22938 | 0.69 | 0.154079 |
Target: 5'- gGUUCGCAGcGGCCUgccaccggCAC-CUGGCGCAa -3' miRNA: 3'- gCGAGCGUC-CCGGA--------GUGcGGUCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 27445 | 0.69 | 0.154079 |
Target: 5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3' miRNA: 3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 26699 | 0.7 | 0.149986 |
Target: 5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3' miRNA: 3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 12134 | 0.7 | 0.144812 |
Target: 5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3' miRNA: 3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 37118 | 0.71 | 0.127439 |
Target: 5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3' miRNA: 3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 8279 | 0.71 | 0.11738 |
Target: 5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3' miRNA: 3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 8424 | 0.71 | 0.114195 |
Target: 5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3' miRNA: 3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 30435 | 0.72 | 0.096721 |
Target: 5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3' miRNA: 3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 8376 | 0.72 | 0.094066 |
Target: 5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3' miRNA: 3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 11192 | 0.74 | 0.073096 |
Target: 5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3' miRNA: 3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5' |
|||||||
26470 | 3' | -62.8 | NC_005357.1 | + | 21679 | 0.74 | 0.071064 |
Target: 5'- gCGCggCGCAGcGCCUCuacgGCGCCAGCaGCAu -3' miRNA: 3'- -GCGa-GCGUCcCGGAG----UGCGGUCG-CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home