Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26473 | 3' | -59.2 | NC_005357.1 | + | 12290 | 0.66 | 0.434452 |
Target: 5'- uCCGACGCgGugcAGGcCG-GCGGCguguucuggcgcgGCCUCa -3' miRNA: 3'- -GGCUGCGgC---UCCaGCuCGUCG-------------UGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 13119 | 0.68 | 0.354903 |
Target: 5'- uCCGGguUGCCGgccaggcguGGGUCGuucuGCAacuGCGCCUCg -3' miRNA: 3'- -GGCU--GCGGC---------UCCAGCu---CGU---CGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 13737 | 0.67 | 0.398314 |
Target: 5'- gCCGAgGCauAGGUCGGGUuguuuuguuccAGCGCCg- -3' miRNA: 3'- -GGCUgCGgcUCCAGCUCG-----------UCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 13886 | 0.74 | 0.129543 |
Target: 5'- gCCGGCgGCCGcaAGGUCGugccguucaacaAGCAGCGCCg- -3' miRNA: 3'- -GGCUG-CGGC--UCCAGC------------UCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 13902 | 0.66 | 0.429713 |
Target: 5'- aUGGCGUCGGGGUuguuccaguucagggCGAugucgcGCAGCGCCg- -3' miRNA: 3'- gGCUGCGGCUCCA---------------GCU------CGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14061 | 0.67 | 0.389363 |
Target: 5'- cCCGGCGCUGGGcGUCGuuGCcuagGGUGCCa- -3' miRNA: 3'- -GGCUGCGGCUC-CAGCu-CG----UCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14116 | 0.68 | 0.353237 |
Target: 5'- uCCGACGCCGAGcGcgcCGAGUucuucaaguucuGCGCCg- -3' miRNA: 3'- -GGCUGCGGCUC-Ca--GCUCGu-----------CGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14351 | 0.69 | 0.288325 |
Target: 5'- aCGACGCCGcGGccaccugcccgcuguUCGAGCAG-ACCgUCg -3' miRNA: 3'- gGCUGCGGCuCC---------------AGCUCGUCgUGG-AG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14408 | 0.68 | 0.338497 |
Target: 5'- gCGACGCCGAcauGaUCGGcuucuucCAGCGCCUCa -3' miRNA: 3'- gGCUGCGGCU---CcAGCUc------GUCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14602 | 0.67 | 0.389363 |
Target: 5'- gCCGGCGCCaccg-CGGGCAGCGCg-- -3' miRNA: 3'- -GGCUGCGGcuccaGCUCGUCGUGgag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14841 | 0.66 | 0.425943 |
Target: 5'- gUCGAUGCCGuuGG-CGGcCAGCGCCg- -3' miRNA: 3'- -GGCUGCGGCu-CCaGCUcGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14931 | 0.69 | 0.307362 |
Target: 5'- gCUGGCgGCCGAGGcCGc-CGGCAuCCUCg -3' miRNA: 3'- -GGCUG-CGGCUCCaGCucGUCGU-GGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 15974 | 0.8 | 0.054079 |
Target: 5'- aCgGAUGCCGAGGUCGAGC-GCAUC-Cg -3' miRNA: 3'- -GgCUGCGGCUCCAGCUCGuCGUGGaG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 16066 | 0.66 | 0.464491 |
Target: 5'- aCGugGCCGccG-CGcGCGGCGCCg- -3' miRNA: 3'- gGCugCGGCucCaGCuCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 16873 | 0.67 | 0.397413 |
Target: 5'- uCCGACGCCGAcaucaucggcuacGGgggCGcugccGGCGGCggcaaaaccgACCUCa -3' miRNA: 3'- -GGCUGCGGCU-------------CCa--GC-----UCGUCG----------UGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 17988 | 0.72 | 0.199419 |
Target: 5'- aUGuCGCCGAGGccgCGcGCGGCACCg- -3' miRNA: 3'- gGCuGCGGCUCCa--GCuCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 18369 | 0.7 | 0.251772 |
Target: 5'- gCCGGCGgCGAGGUUG-GCcuugccgauGGCGCCg- -3' miRNA: 3'- -GGCUGCgGCUCCAGCuCG---------UCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 18932 | 0.67 | 0.389363 |
Target: 5'- gCGGaacUGCCGcAGGUCGAGauucccacgGGCACCUg -3' miRNA: 3'- gGCU---GCGGC-UCCAGCUCg--------UCGUGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 19346 | 0.68 | 0.363313 |
Target: 5'- uUGGCGUCGGGG-CGAGCAuGUACaugUCg -3' miRNA: 3'- gGCUGCGGCUCCaGCUCGU-CGUGg--AG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 19366 | 0.66 | 0.425943 |
Target: 5'- uUGcCGuuGAGGUCGGcCAGgGCCUUg -3' miRNA: 3'- gGCuGCggCUCCAGCUcGUCgUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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