miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 41143 0.68 0.34663
Target:  5'- gCGGCGgUGuGGgCGGGCAuCACCUCg -3'
miRNA:   3'- gGCUGCgGCuCCaGCUCGUcGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 35193 0.69 0.314935
Target:  5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 17988 0.72 0.199419
Target:  5'- aUGuCGCCGAGGccgCGcGCGGCACCg- -3'
miRNA:   3'- gGCuGCGGCUCCa--GCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 10311 0.76 0.103783
Target:  5'- -gGGCGUCGAGGUCG-GCAGCgGCCa- -3'
miRNA:   3'- ggCUGCGGCUCCAGCuCGUCG-UGGag -5'
26473 3' -59.2 NC_005357.1 + 31060 0.66 0.435404
Target:  5'- aCCGAggUGCCG-GG-CGAGCAGguCGCCa- -3'
miRNA:   3'- -GGCU--GCGGCuCCaGCUCGUC--GUGGag -5'
26473 3' -59.2 NC_005357.1 + 8555 0.67 0.389363
Target:  5'- gCCG-CGCCGAuGG-CGGGCAGCGa--- -3'
miRNA:   3'- -GGCuGCGGCU-CCaGCUCGUCGUggag -5'
26473 3' -59.2 NC_005357.1 + 7608 0.69 0.314935
Target:  5'- -gGACaGCaCGuGGUCGcGCAGCGCCg- -3'
miRNA:   3'- ggCUG-CG-GCuCCAGCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 39327 0.77 0.090215
Target:  5'- aUGACGCCGcaucAGGUCGAGaCAGCACaagugCUCa -3'
miRNA:   3'- gGCUGCGGC----UCCAGCUC-GUCGUG-----GAG- -5'
26473 3' -59.2 NC_005357.1 + 6371 0.67 0.389363
Target:  5'- -gGGCGCUGgguuacaccAGGUCGGccgccGCGGCGcCCUCg -3'
miRNA:   3'- ggCUGCGGC---------UCCAGCU-----CGUCGU-GGAG- -5'
26473 3' -59.2 NC_005357.1 + 15974 0.8 0.054079
Target:  5'- aCgGAUGCCGAGGUCGAGC-GCAUC-Cg -3'
miRNA:   3'- -GgCUGCGGCUCCAGCUCGuCGUGGaG- -5'
26473 3' -59.2 NC_005357.1 + 35155 0.69 0.314935
Target:  5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3'
miRNA:   3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5'
26473 3' -59.2 NC_005357.1 + 14116 0.68 0.353237
Target:  5'- uCCGACGCCGAGcGcgcCGAGUucuucaaguucuGCGCCg- -3'
miRNA:   3'- -GGCUGCGGCUC-Ca--GCUCGu-----------CGUGGag -5'
26473 3' -59.2 NC_005357.1 + 14351 0.69 0.288325
Target:  5'- aCGACGCCGcGGccaccugcccgcuguUCGAGCAG-ACCgUCg -3'
miRNA:   3'- gGCUGCGGCuCC---------------AGCUCGUCgUGG-AG- -5'
26473 3' -59.2 NC_005357.1 + 31628 0.71 0.204732
Target:  5'- gCCG-CGCCGAGG-CGcAGCAGUACaugCa -3'
miRNA:   3'- -GGCuGCGGCUCCaGC-UCGUCGUGga-G- -5'
26473 3' -59.2 NC_005357.1 + 34794 0.73 0.1655
Target:  5'- gCCGGCGU--GGGUCGAGCcGCGCCc- -3'
miRNA:   3'- -GGCUGCGgcUCCAGCUCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 33870 0.75 0.112824
Target:  5'- aCGACGCCcaggauGAGGUCGAGC-GCgGCCUg -3'
miRNA:   3'- gGCUGCGG------CUCCAGCUCGuCG-UGGAg -5'
26473 3' -59.2 NC_005357.1 + 20862 0.66 0.464491
Target:  5'- -aGugGCCGAGcGgcaCGAGgaaaAGCugCUCa -3'
miRNA:   3'- ggCugCGGCUC-Ca--GCUCg---UCGugGAG- -5'
26473 3' -59.2 NC_005357.1 + 32589 0.66 0.444984
Target:  5'- aUCGACGCCGAaacCGAGguGCAgCg- -3'
miRNA:   3'- -GGCUGCGGCUccaGCUCguCGUgGag -5'
26473 3' -59.2 NC_005357.1 + 4671 0.67 0.416607
Target:  5'- gUCGAUGCCGuAGGUagccgccccggUGAGaaaGGCACCg- -3'
miRNA:   3'- -GGCUGCGGC-UCCA-----------GCUCg--UCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 14602 0.67 0.389363
Target:  5'- gCCGGCGCCaccg-CGGGCAGCGCg-- -3'
miRNA:   3'- -GGCUGCGGcuccaGCUCGUCGUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.