miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 29379 1.08 0.00065
Target:  5'- gCAGACGGCCGCACUCAAGCAACGCGAu -3'
miRNA:   3'- -GUCUGCCGGCGUGAGUUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 34208 0.69 0.430327
Target:  5'- -uGACGGCCGC---CGAcCAGCGCGAc -3'
miRNA:   3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 37261 0.68 0.440156
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 41842 0.66 0.615589
Target:  5'- gCAGGCGGCCaucaaACUCAAGgAacuggaaaccaauucGCGCGu -3'
miRNA:   3'- -GUCUGCCGGcg---UGAGUUCgU---------------UGCGCu -5'
26475 5' -56 NC_005357.1 + 13888 0.71 0.292211
Target:  5'- -cGGCGGCCGCAaggucgugccgUUCAacaAGCAGCGCc- -3'
miRNA:   3'- guCUGCCGGCGU-----------GAGU---UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 30416 0.71 0.307413
Target:  5'- cCGGccACGGCCGCGCUgCuGGCcGACGUGGa -3'
miRNA:   3'- -GUC--UGCCGGCGUGA-GuUCG-UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 21243 0.71 0.323212
Target:  5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3'
miRNA:   3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5'
26475 5' -56 NC_005357.1 + 26021 0.71 0.323212
Target:  5'- --cGCGGCCGUguccuACuUCGAGCAACGcCGAu -3'
miRNA:   3'- gucUGCCGGCG-----UG-AGUUCGUUGC-GCU- -5'
26475 5' -56 NC_005357.1 + 18209 0.69 0.400695
Target:  5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3'
miRNA:   3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 26162 0.69 0.420627
Target:  5'- cCGGGUGGCCGCGCgCGAGgcCAACGCc- -3'
miRNA:   3'- -GUCUGCCGGCGUGaGUUC--GUUGCGcu -5'
26475 5' -56 NC_005357.1 + 27055 0.69 0.411061
Target:  5'- gCAcGCGGaCGCGCUCAccgaggugaAGCAGCGCa- -3'
miRNA:   3'- -GUcUGCCgGCGUGAGU---------UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 17349 0.7 0.356601
Target:  5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3'
miRNA:   3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 33065 0.75 0.181047
Target:  5'- gCAcGCGGCCGCAUcaUCAAGCAACuGCa- -3'
miRNA:   3'- -GUcUGCCGGCGUG--AGUUCGUUG-CGcu -5'
26475 5' -56 NC_005357.1 + 8550 0.69 0.419664
Target:  5'- -cGACaGCCGCGCcgauggCGGGCAgcgacagGCGCGAc -3'
miRNA:   3'- guCUGcCGGCGUGa-----GUUCGU-------UGCGCU- -5'
26475 5' -56 NC_005357.1 + 17134 0.73 0.21843
Target:  5'- aGGGcCGGCCGCACgaccucaaggcauUCGacgaagugaccgAGCAGCGCGAg -3'
miRNA:   3'- gUCU-GCCGGCGUG-------------AGU------------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 5152 0.7 0.348031
Target:  5'- gCAGGCGGCCGUcgcuGCUCAcGCccuugGCGAg -3'
miRNA:   3'- -GUCUGCCGGCG----UGAGUuCGuug--CGCU- -5'
26475 5' -56 NC_005357.1 + 19130 0.69 0.420627
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5'
26475 5' -56 NC_005357.1 + 12454 0.69 0.430327
Target:  5'- -cGACGGCUGCAUcCAGGCcgucgugcgcCGCGAc -3'
miRNA:   3'- guCUGCCGGCGUGaGUUCGuu--------GCGCU- -5'
26475 5' -56 NC_005357.1 + 14594 0.73 0.219018
Target:  5'- gCGGcGCGGCCgGCGCcaccgCGGGCAGCGCGc -3'
miRNA:   3'- -GUC-UGCCGG-CGUGa----GUUCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 10325 0.71 0.315238
Target:  5'- gCAG-CGGCCaGgGCgUUGAGCAACGCGGc -3'
miRNA:   3'- -GUCuGCCGG-CgUG-AGUUCGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.