Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26476 | 3' | -65.6 | NC_005357.1 | + | 455 | 0.66 | 0.224942 |
Target: 5'- cUGCgCGGCCAGcuugcGGGCGCUgu-CGCGGu -3' miRNA: 3'- uGCG-GCCGGUU-----CCCGCGGgucGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 27502 | 0.66 | 0.208073 |
Target: 5'- cCGgCGGCCucGGcCGCCagcuucuCGGCGCGGu -3' miRNA: 3'- uGCgGCCGGuuCCcGCGG-------GUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 38496 | 0.67 | 0.18793 |
Target: 5'- uCGCUGGCUuucaaacucgcauGGGGGCGCggCCAuGCGUGa -3' miRNA: 3'- uGCGGCCGG-------------UUCCCGCG--GGU-CGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 1303 | 0.67 | 0.188412 |
Target: 5'- cCGCCGcGCCcAGGGCgacggccaccagGCCgacaAGCGCGa -3' miRNA: 3'- uGCGGC-CGGuUCCCG------------CGGg---UCGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 34797 | 0.67 | 0.188412 |
Target: 5'- cUGCaaGGCCAAGGccacGUGUCCGGCGCu- -3' miRNA: 3'- uGCGg-CCGGUUCC----CGCGGGUCGCGcc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 10785 | 0.67 | 0.171733 |
Target: 5'- --uUCGGCCuGGGauugcauguacugcuGCGCCuCGGCGCGGc -3' miRNA: 3'- ugcGGCCGGuUCC---------------CGCGG-GUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 36075 | 0.67 | 0.174418 |
Target: 5'- aGCGCCccGGCCuucgggccGGGCGCUUuggcuGGgGCGGa -3' miRNA: 3'- -UGCGG--CCGGuu------CCCGCGGG-----UCgCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 38042 | 0.67 | 0.183641 |
Target: 5'- gGC-CCGGCgCGAcGGCGCCUGGCuGCGc -3' miRNA: 3'- -UGcGGCCG-GUUcCCGCGGGUCG-CGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 4562 | 0.67 | 0.188412 |
Target: 5'- -gGCCGaagucGCCGAGGcGCuGCUCGGUGCGc -3' miRNA: 3'- ugCGGC-----CGGUUCC-CG-CGGGUCGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 35795 | 0.67 | 0.178977 |
Target: 5'- cACuCCGGCCAAGcGCGCgaagCUGGCgGCGGa -3' miRNA: 3'- -UGcGGCCGGUUCcCGCG----GGUCG-CGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 30840 | 0.67 | 0.188412 |
Target: 5'- cCGgCGGCCAGccGGCgGCCCuGgGCGGc -3' miRNA: 3'- uGCgGCCGGUUc-CCG-CGGGuCgCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 35192 | 0.67 | 0.183641 |
Target: 5'- -gGCCGacaucGCCGAGGGUgaGCgCGGCGCa- -3' miRNA: 3'- ugCGGC-----CGGUUCCCG--CGgGUCGCGcc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 38710 | 0.67 | 0.165611 |
Target: 5'- gGCGUgaaCGGCac-GGGCGCCacgAGCGCGu -3' miRNA: 3'- -UGCG---GCCGguuCCCGCGGg--UCGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 18330 | 0.67 | 0.169964 |
Target: 5'- cGCGCauGUagcGGGGUGCCCGugccccGCGCGGu -3' miRNA: 3'- -UGCGgcCGgu-UCCCGCGGGU------CGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 37736 | 0.67 | 0.169964 |
Target: 5'- uUGCCGGCCAuucucgccGCGCuauCCGGCGCGc -3' miRNA: 3'- uGCGGCCGGUucc-----CGCG---GGUCGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 12293 | 0.67 | 0.178977 |
Target: 5'- gACGCggugcaGGCCGGcGGCGUguuCUGGCGCGGc -3' miRNA: 3'- -UGCGg-----CCGGUUcCCGCG---GGUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 26975 | 0.67 | 0.182231 |
Target: 5'- aGCuUCGGCCAAGGGCGCgUcaagaacaucaacaAGCuGUGGu -3' miRNA: 3'- -UGcGGCCGGUUCCCGCGgG--------------UCG-CGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 31148 | 0.67 | 0.183641 |
Target: 5'- cCGCCuaccuGGCCGAGcgucccaGCGCCgCAGCGCa- -3' miRNA: 3'- uGCGG-----CCGGUUCc------CGCGG-GUCGCGcc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 42029 | 0.67 | 0.183641 |
Target: 5'- cCGCCGuGCUgcugguGGGCGCCCuGgGCa- -3' miRNA: 3'- uGCGGC-CGGuu----CCCGCGGGuCgCGcc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 16169 | 0.67 | 0.18793 |
Target: 5'- cCGaCCaGGCCGGcGGGUGCCCGugccuucggcgacGCGCGc -3' miRNA: 3'- uGC-GG-CCGGUU-CCCGCGGGU-------------CGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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