miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 5931 0.66 0.217731
Target:  5'- cCGCUGGCggCAucccagacguacacGGGGCcauuGUCCAGCGCGu -3'
miRNA:   3'- uGCGGCCG--GU--------------UCCCG----CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 6741 0.66 0.208599
Target:  5'- gGCGUCGGCCuu-GGCGCCCcacuuuuccuuGGCGa-- -3'
miRNA:   3'- -UGCGGCCGGuucCCGCGGG-----------UCGCgcc -5'
26476 3' -65.6 NC_005357.1 + 7080 0.69 0.114429
Target:  5'- gACGCCgcGGCCuacccacGGcGCGCCCAcGCGCa- -3'
miRNA:   3'- -UGCGG--CCGGuu-----CC-CGCGGGU-CGCGcc -5'
26476 3' -65.6 NC_005357.1 + 7909 0.71 0.080496
Target:  5'- uUGCCucccaucuuGCCGAGGGCGaacaCCGGCGCGa -3'
miRNA:   3'- uGCGGc--------CGGUUCCCGCg---GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 8806 0.67 0.183641
Target:  5'- cGCGCCGGUCAGuaccgaucugcuGGGUcgGgCCAGCcgcaacGCGGg -3'
miRNA:   3'- -UGCGGCCGGUU------------CCCG--CgGGUCG------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 8858 0.69 0.120714
Target:  5'- cGCGuuGGCCucGGuCGCCacgaagcgGGCGCGGg -3'
miRNA:   3'- -UGCggCCGGuuCCcGCGGg-------UCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 8996 0.69 0.114429
Target:  5'- uCGCC-GCgCGGGGGCGCuuCCAGCagGCGGc -3'
miRNA:   3'- uGCGGcCG-GUUCCCGCG--GGUCG--CGCC- -5'
26476 3' -65.6 NC_005357.1 + 9248 0.77 0.030498
Target:  5'- -gGCCGuGCCGAGGGCGCCCAcuucCGCa- -3'
miRNA:   3'- ugCGGC-CGGUUCCCGCGGGUc---GCGcc -5'
26476 3' -65.6 NC_005357.1 + 10399 0.75 0.04386
Target:  5'- cGCGCCGGguUCAAugucguGGGCGUCCAGCGUGu -3'
miRNA:   3'- -UGCGGCC--GGUU------CCCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 10785 0.67 0.171733
Target:  5'- --uUCGGCCuGGGauugcauguacugcuGCGCCuCGGCGCGGc -3'
miRNA:   3'- ugcGGCCGGuUCC---------------CGCGG-GUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 12007 0.68 0.145318
Target:  5'- cACGUCGGCCAGcagcgcggccGuGGCcggcgaggucuuGCCCAGCGUGu -3'
miRNA:   3'- -UGCGGCCGGUU----------C-CCG------------CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 12293 0.67 0.178977
Target:  5'- gACGCggugcaGGCCGGcGGCGUguuCUGGCGCGGc -3'
miRNA:   3'- -UGCGg-----CCGGUUcCCGCG---GGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 12808 0.74 0.0504
Target:  5'- aGC-CCGGCCAcaaGCGCCCGGCGCuGGa -3'
miRNA:   3'- -UGcGGCCGGUuccCGCGGGUCGCG-CC- -5'
26476 3' -65.6 NC_005357.1 + 13052 0.71 0.094763
Target:  5'- cGCGCCGaGuCCGAGGGCuggggcaagGCcaCCGGCGCGu -3'
miRNA:   3'- -UGCGGC-C-GGUUCCCG---------CG--GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 13174 0.73 0.064639
Target:  5'- gUGUCGGCCGcgcuGGGCGCCCuuGGC-CGGc -3'
miRNA:   3'- uGCGGCCGGUu---CCCGCGGG--UCGcGCC- -5'
26476 3' -65.6 NC_005357.1 + 14085 0.66 0.219377
Target:  5'- cGCGCUgcccgacgaGGCCAAGGccaucgaguccGaCGCCgAGCGCGc -3'
miRNA:   3'- -UGCGG---------CCGGUUCC-----------C-GCGGgUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 14132 0.66 0.224942
Target:  5'- uCGUCGGCCAGcGGCuuGCcuuccggccguuCCAGCGCGu -3'
miRNA:   3'- uGCGGCCGGUUcCCG--CG------------GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 14920 0.66 0.208073
Target:  5'- cGCGCCgagaagcuggcGGCCGAGGcCGCCgGcauccucGCGUGGu -3'
miRNA:   3'- -UGCGG-----------CCGGUUCCcGCGGgU-------CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 14989 0.73 0.057885
Target:  5'- aGCGCCagGGCCugcGGcCGCCgGGCGCGGu -3'
miRNA:   3'- -UGCGG--CCGGuucCC-GCGGgUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 15140 0.7 0.10003
Target:  5'- cAUGCUGGCgGcGGauGCGCCCAGgGCGa -3'
miRNA:   3'- -UGCGGCCGgUuCC--CGCGGGUCgCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.