miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 455 0.66 0.224942
Target:  5'- cUGCgCGGCCAGcuugcGGGCGCUgu-CGCGGu -3'
miRNA:   3'- uGCG-GCCGGUU-----CCCGCGGgucGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 611 0.66 0.208599
Target:  5'- cAUGUCGGCgAugauGGCcucaGCCuCGGCGCGGg -3'
miRNA:   3'- -UGCGGCCGgUuc--CCG----CGG-GUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 613 0.66 0.21393
Target:  5'- -gGUCGGCCAgcAGcgccguggacacGGCGUCCGGCGuCGa -3'
miRNA:   3'- ugCGGCCGGU--UC------------CCGCGGGUCGC-GCc -5'
26476 3' -65.6 NC_005357.1 + 692 0.7 0.111104
Target:  5'- gGCGCCGGCC--GGGCcgcccaagauaccGCCCAGgauagggGCGGc -3'
miRNA:   3'- -UGCGGCCGGuuCCCG-------------CGGGUCg------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 1303 0.67 0.188412
Target:  5'- cCGCCGcGCCcAGGGCgacggccaccagGCCgacaAGCGCGa -3'
miRNA:   3'- uGCGGC-CGGuUCCCG------------CGGg---UCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 1722 0.75 0.04637
Target:  5'- gUGCCGG-CGAGGGCGUCCAaguccuCGCGGg -3'
miRNA:   3'- uGCGGCCgGUUCCCGCGGGUc-----GCGCC- -5'
26476 3' -65.6 NC_005357.1 + 1763 0.72 0.070197
Target:  5'- -gGCCGGCCu---GCGCCUGGCGCGu -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 1887 0.77 0.029655
Target:  5'- gGCGCUGGCCGgguGGGCGaaCAGCaGCGGg -3'
miRNA:   3'- -UGCGGCCGGUu--CCCGCggGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 2720 0.67 0.188412
Target:  5'- cACGuuGGCCGgacgcuugAGcGCgGCCCGGCGCu- -3'
miRNA:   3'- -UGCggCCGGU--------UCcCG-CGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 2850 0.69 0.128338
Target:  5'- gGCGCCagcaccagcgaggGGCCugguucgaccaguucGAGGaUGUCCAGCGCGGu -3'
miRNA:   3'- -UGCGG-------------CCGG---------------UUCCcGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 3817 0.71 0.094507
Target:  5'- -aGgCGGUCGGGGGCGCCguugcgaccaaucCAGCGCa- -3'
miRNA:   3'- ugCgGCCGGUUCCCGCGG-------------GUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 4016 0.72 0.070197
Target:  5'- cGCGCCGGCCAccaGCGUCaugccGCGCGGg -3'
miRNA:   3'- -UGCGGCCGGUuccCGCGGgu---CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 4040 0.68 0.157205
Target:  5'- -aGCCGGCCGcggcgAGcGGCaggccagcgGCCCAGgGgGGa -3'
miRNA:   3'- ugCGGCCGGU-----UC-CCG---------CGGGUCgCgCC- -5'
26476 3' -65.6 NC_005357.1 + 4094 0.68 0.157205
Target:  5'- -gGCCGGCCAGGugggcGGCGCUgAauucGuCGCGGu -3'
miRNA:   3'- ugCGGCCGGUUC-----CCGCGGgU----C-GCGCC- -5'
26476 3' -65.6 NC_005357.1 + 4170 0.7 0.096838
Target:  5'- cGCGCCGuggucgagguguaGCCAGuGGGCGCCgaaaaguuggaauCGGCGCGc -3'
miRNA:   3'- -UGCGGC-------------CGGUU-CCCGCGG-------------GUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 4430 0.69 0.130746
Target:  5'- gUGCCGcGCCAGGGGgaaGCCgcCAGCgGUGGc -3'
miRNA:   3'- uGCGGC-CGGUUCCCg--CGG--GUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 4562 0.67 0.188412
Target:  5'- -gGCCGaagucGCCGAGGcGCuGCUCGGUGCGc -3'
miRNA:   3'- ugCGGC-----CGGUUCC-CG-CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 4863 0.72 0.07215
Target:  5'- uGC-CCGGUCAGGucguUGCCCAGCGCGGc -3'
miRNA:   3'- -UGcGGCCGGUUCcc--GCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 5101 0.73 0.061172
Target:  5'- -gGCCGGCCca--GCGUCCGGUGCGGc -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 5527 0.7 0.111402
Target:  5'- cACGCCGGCCGcccAGGuucCGCCCAGguCGCc- -3'
miRNA:   3'- -UGCGGCCGGU---UCCc--GCGGGUC--GCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.