miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 29245 1.08 0.000096
Target:  5'- aACGCCGGCCAAGGGCGCCCAGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGUUCCCGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 1887 0.77 0.029655
Target:  5'- gGCGCUGGCCGgguGGGCGaaCAGCaGCGGg -3'
miRNA:   3'- -UGCGGCCGGUu--CCCGCggGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 9248 0.77 0.030498
Target:  5'- -gGCCGuGCCGAGGGCGCCCAcuucCGCa- -3'
miRNA:   3'- ugCGGC-CGGUUCCCGCGGGUc---GCGcc -5'
26476 3' -65.6 NC_005357.1 + 10399 0.75 0.04386
Target:  5'- cGCGCCGGguUCAAugucguGGGCGUCCAGCGUGu -3'
miRNA:   3'- -UGCGGCC--GGUU------CCCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 1722 0.75 0.04637
Target:  5'- gUGCCGG-CGAGGGCGUCCAaguccuCGCGGg -3'
miRNA:   3'- uGCGGCCgGUUCCCGCGGGUc-----GCGCC- -5'
26476 3' -65.6 NC_005357.1 + 24576 0.74 0.04902
Target:  5'- -gGCCGGCCAcggucGGGcCGUCCGGCGUGu -3'
miRNA:   3'- ugCGGCCGGUu----CCC-GCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 12808 0.74 0.0504
Target:  5'- aGC-CCGGCCAcaaGCGCCCGGCGCuGGa -3'
miRNA:   3'- -UGcGGCCGGUuccCGCGGGUCGCG-CC- -5'
26476 3' -65.6 NC_005357.1 + 35012 0.73 0.057885
Target:  5'- -gGCCGGCCAuccGGUGCCCGGCuucaagcugGUGGa -3'
miRNA:   3'- ugCGGCCGGUuc-CCGCGGGUCG---------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 27558 0.73 0.057885
Target:  5'- -aGCCGGgCAAcuuaaaGGCGCCCAGCGUGcGg -3'
miRNA:   3'- ugCGGCCgGUUc-----CCGCGGGUCGCGC-C- -5'
26476 3' -65.6 NC_005357.1 + 14989 0.73 0.057885
Target:  5'- aGCGCCagGGCCugcGGcCGCCgGGCGCGGu -3'
miRNA:   3'- -UGCGG--CCGGuucCC-GCGGgUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 5101 0.73 0.061172
Target:  5'- -gGCCGGCCca--GCGUCCGGUGCGGc -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 13174 0.73 0.064639
Target:  5'- gUGUCGGCCGcgcuGGGCGCCCuuGGC-CGGc -3'
miRNA:   3'- uGCGGCCGGUu---CCCGCGGG--UCGcGCC- -5'
26476 3' -65.6 NC_005357.1 + 23435 0.72 0.06924
Target:  5'- gACGCCGGCCGGGaugcggaugguucGCGCguacacgCCGGCGUGGa -3'
miRNA:   3'- -UGCGGCCGGUUCc------------CGCG-------GGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 4016 0.72 0.070197
Target:  5'- cGCGCCGGCCAccaGCGUCaugccGCGCGGg -3'
miRNA:   3'- -UGCGGCCGGUuccCGCGGgu---CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 1763 0.72 0.070197
Target:  5'- -gGCCGGCCu---GCGCCUGGCGCGu -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 4863 0.72 0.07215
Target:  5'- uGC-CCGGUCAGGucguUGCCCAGCGCGGc -3'
miRNA:   3'- -UGcGGCCGGUUCcc--GCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 31191 0.72 0.073347
Target:  5'- cGCGCacguucugccugaCGGUCGAGGGCGaaagcaugaagaacCCCGGCGCGcGg -3'
miRNA:   3'- -UGCG-------------GCCGGUUCCCGC--------------GGGUCGCGC-C- -5'
26476 3' -65.6 NC_005357.1 + 16876 0.72 0.078327
Target:  5'- gACGCCgacaucaucGGCUAcgGGGGCGCugCCGGCgGCGGc -3'
miRNA:   3'- -UGCGG---------CCGGU--UCCCGCG--GGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 7909 0.71 0.080496
Target:  5'- uUGCCucccaucuuGCCGAGGGCGaacaCCGGCGCGa -3'
miRNA:   3'- uGCGGc--------CGGUUCCCGCg---GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 21710 0.71 0.082723
Target:  5'- cAUGUCGGCCugauGGGGUGCCC-GUGCc- -3'
miRNA:   3'- -UGCGGCCGGu---UCCCGCGGGuCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.