Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26476 | 3' | -65.6 | NC_005357.1 | + | 8858 | 0.69 | 0.120714 |
Target: 5'- cGCGuuGGCCucGGuCGCCacgaagcgGGCGCGGg -3' miRNA: 3'- -UGCggCCGGuuCCcGCGGg-------UCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 15140 | 0.7 | 0.10003 |
Target: 5'- cAUGCUGGCgGcGGauGCGCCCAGgGCGa -3' miRNA: 3'- -UGCGGCCGgUuCC--CGCGGGUCgCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 31025 | 0.7 | 0.105572 |
Target: 5'- uUGCCGGCCGAGGcaaucGCGCgggCCAacguGCGCGa -3' miRNA: 3'- uGCGGCCGGUUCC-----CGCG---GGU----CGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 18042 | 0.7 | 0.108451 |
Target: 5'- -gGCgGGCUgcuuGGGGGCcuuaCCGGCGCGGg -3' miRNA: 3'- ugCGgCCGG----UUCCCGcg--GGUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 692 | 0.7 | 0.111104 |
Target: 5'- gGCGCCGGCC--GGGCcgcccaagauaccGCCCAGgauagggGCGGc -3' miRNA: 3'- -UGCGGCCGGuuCCCG-------------CGGGUCg------CGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 5527 | 0.7 | 0.111402 |
Target: 5'- cACGCCGGCCGcccAGGuucCGCCCAGguCGCc- -3' miRNA: 3'- -UGCGGCCGGU---UCCc--GCGGGUC--GCGcc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 7080 | 0.69 | 0.114429 |
Target: 5'- gACGCCgcGGCCuacccacGGcGCGCCCAcGCGCa- -3' miRNA: 3'- -UGCGG--CCGGuu-----CC-CGCGGGU-CGCGcc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 8996 | 0.69 | 0.114429 |
Target: 5'- uCGCC-GCgCGGGGGCGCuuCCAGCagGCGGc -3' miRNA: 3'- uGCGGcCG-GUUCCCGCG--GGUCG--CGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 40561 | 0.69 | 0.114429 |
Target: 5'- aGCGCCGGCCAcGGGCugaaCCuGCaagacgGCGGc -3' miRNA: 3'- -UGCGGCCGGUuCCCGcg--GGuCG------CGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 4170 | 0.7 | 0.096838 |
Target: 5'- cGCGCCGuggucgagguguaGCCAGuGGGCGCCgaaaaguuggaauCGGCGCGc -3' miRNA: 3'- -UGCGGC-------------CGGUU-CCCGCGG-------------GUCGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 28560 | 0.71 | 0.09074 |
Target: 5'- cCGCCGGCCAucgcGGcGCGCacgucggccaccggCAGCGUGGu -3' miRNA: 3'- uGCGGCCGGUu---CC-CGCGg-------------GUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 23698 | 0.71 | 0.087353 |
Target: 5'- cACGUacaGGCCGGuaGCGCCCAGguCGCGGg -3' miRNA: 3'- -UGCGg--CCGGUUccCGCGGGUC--GCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 24576 | 0.74 | 0.04902 |
Target: 5'- -gGCCGGCCAcggucGGGcCGUCCGGCGUGu -3' miRNA: 3'- ugCGGCCGGUu----CCC-GCGGGUCGCGCc -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 35012 | 0.73 | 0.057885 |
Target: 5'- -gGCCGGCCAuccGGUGCCCGGCuucaagcugGUGGa -3' miRNA: 3'- ugCGGCCGGUuc-CCGCGGGUCG---------CGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 13174 | 0.73 | 0.064639 |
Target: 5'- gUGUCGGCCGcgcuGGGCGCCCuuGGC-CGGc -3' miRNA: 3'- uGCGGCCGGUu---CCCGCGGG--UCGcGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 23435 | 0.72 | 0.06924 |
Target: 5'- gACGCCGGCCGGGaugcggaugguucGCGCguacacgCCGGCGUGGa -3' miRNA: 3'- -UGCGGCCGGUUCc------------CGCG-------GGUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 4016 | 0.72 | 0.070197 |
Target: 5'- cGCGCCGGCCAccaGCGUCaugccGCGCGGg -3' miRNA: 3'- -UGCGGCCGGUuccCGCGGgu---CGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 4863 | 0.72 | 0.07215 |
Target: 5'- uGC-CCGGUCAGGucguUGCCCAGCGCGGc -3' miRNA: 3'- -UGcGGCCGGUUCcc--GCGGGUCGCGCC- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 31191 | 0.72 | 0.073347 |
Target: 5'- cGCGCacguucugccugaCGGUCGAGGGCGaaagcaugaagaacCCCGGCGCGcGg -3' miRNA: 3'- -UGCG-------------GCCGGUUCCCGC--------------GGGUCGCGC-C- -5' |
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26476 | 3' | -65.6 | NC_005357.1 | + | 7909 | 0.71 | 0.080496 |
Target: 5'- uUGCCucccaucuuGCCGAGGGCGaacaCCGGCGCGa -3' miRNA: 3'- uGCGGc--------CGGUUCCCGCg---GGUCGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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