miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 29245 1.08 0.000096
Target:  5'- aACGCCGGCCAAGGGCGCCCAGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGUUCCCGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 16371 0.7 0.10003
Target:  5'- uCGCCGaGCgCAuGGagcGCGCCCGccGCGCGGg -3'
miRNA:   3'- uGCGGC-CG-GUuCC---CGCGGGU--CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 32551 0.7 0.111402
Target:  5'- cGCGCCuGGCCGAGaagcaGCGCgCCGGUGCc- -3'
miRNA:   3'- -UGCGG-CCGGUUCc----CGCG-GGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 35240 0.66 0.224942
Target:  5'- cGCGCuguccCGGCUGcgucAGGGCG-UCAGCGCGu -3'
miRNA:   3'- -UGCG-----GCCGGU----UCCCGCgGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 12808 0.74 0.0504
Target:  5'- aGC-CCGGCCAcaaGCGCCCGGCGCuGGa -3'
miRNA:   3'- -UGcGGCCGGUuccCGCGGGUCGCG-CC- -5'
26476 3' -65.6 NC_005357.1 + 27558 0.73 0.057885
Target:  5'- -aGCCGGgCAAcuuaaaGGCGCCCAGCGUGcGg -3'
miRNA:   3'- ugCGGCCgGUUc-----CCGCGGGUCGCGC-C- -5'
26476 3' -65.6 NC_005357.1 + 5101 0.73 0.061172
Target:  5'- -gGCCGGCCca--GCGUCCGGUGCGGc -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 1763 0.72 0.070197
Target:  5'- -gGCCGGCCu---GCGCCUGGCGCGu -3'
miRNA:   3'- ugCGGCCGGuuccCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 41114 0.71 0.08976
Target:  5'- uUGUCGGCCuGGuGGCcgucGCCCugGGCGCGGc -3'
miRNA:   3'- uGCGGCCGGuUC-CCG----CGGG--UCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 24350 0.71 0.094763
Target:  5'- cGCGCCGGCUuc-GGCgGCCCAGCaCGc -3'
miRNA:   3'- -UGCGGCCGGuucCCG-CGGGUCGcGCc -5'
26476 3' -65.6 NC_005357.1 + 29131 0.71 0.094763
Target:  5'- aACGCCGGCCccGGcGCGCUgcaauCGGCGCu- -3'
miRNA:   3'- -UGCGGCCGGuuCC-CGCGG-----GUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 21710 0.71 0.082723
Target:  5'- cAUGUCGGCCugauGGGGUGCCC-GUGCc- -3'
miRNA:   3'- -UGCGGCCGGu---UCCCGCGGGuCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 1887 0.77 0.029655
Target:  5'- gGCGCUGGCCGgguGGGCGaaCAGCaGCGGg -3'
miRNA:   3'- -UGCGGCCGGUu--CCCGCggGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 13052 0.71 0.094763
Target:  5'- cGCGCCGaGuCCGAGGGCuggggcaagGCcaCCGGCGCGu -3'
miRNA:   3'- -UGCGGC-C-GGUUCCCG---------CG--GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 9248 0.77 0.030498
Target:  5'- -gGCCGuGCCGAGGGCGCCCAcuucCGCa- -3'
miRNA:   3'- ugCGGC-CGGUUCCCGCGGGUc---GCGcc -5'
26476 3' -65.6 NC_005357.1 + 16876 0.72 0.078327
Target:  5'- gACGCCgacaucaucGGCUAcgGGGGCGCugCCGGCgGCGGc -3'
miRNA:   3'- -UGCGG---------CCGGU--UCCCGCG--GGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 16674 0.71 0.094763
Target:  5'- cCGCCGcCCAgcAGcGCGCCCAGCGUGc -3'
miRNA:   3'- uGCGGCcGGU--UCcCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 40729 0.7 0.101663
Target:  5'- cACGCCGGCCcacGGCGaauuucucgacuaCCuGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGuucCCGCg------------GGuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 10399 0.75 0.04386
Target:  5'- cGCGCCGGguUCAAugucguGGGCGUCCAGCGUGu -3'
miRNA:   3'- -UGCGGCC--GGUU------CCCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 14989 0.73 0.057885
Target:  5'- aGCGCCagGGCCugcGGcCGCCgGGCGCGGu -3'
miRNA:   3'- -UGCGG--CCGGuucCC-GCGGgUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.