miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 23698 0.71 0.087353
Target:  5'- cACGUacaGGCCGGuaGCGCCCAGguCGCGGg -3'
miRNA:   3'- -UGCGg--CCGGUUccCGCGGGUC--GCGCC- -5'
26476 3' -65.6 NC_005357.1 + 41114 0.71 0.08976
Target:  5'- uUGUCGGCCuGGuGGCcgucGCCCugGGCGCGGc -3'
miRNA:   3'- uGCGGCCGGuUC-CCG----CGGG--UCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 28560 0.71 0.09074
Target:  5'- cCGCCGGCCAucgcGGcGCGCacgucggccaccggCAGCGUGGu -3'
miRNA:   3'- uGCGGCCGGUu---CC-CGCGg-------------GUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 3817 0.71 0.094507
Target:  5'- -aGgCGGUCGGGGGCGCCguugcgaccaaucCAGCGCa- -3'
miRNA:   3'- ugCgGCCGGUUCCCGCGG-------------GUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 24350 0.71 0.094763
Target:  5'- cGCGCCGGCUuc-GGCgGCCCAGCaCGc -3'
miRNA:   3'- -UGCGGCCGGuucCCG-CGGGUCGcGCc -5'
26476 3' -65.6 NC_005357.1 + 16674 0.71 0.094763
Target:  5'- cCGCCGcCCAgcAGcGCGCCCAGCGUGc -3'
miRNA:   3'- uGCGGCcGGU--UCcCGCGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 29131 0.71 0.094763
Target:  5'- aACGCCGGCCccGGcGCGCUgcaauCGGCGCu- -3'
miRNA:   3'- -UGCGGCCGGuuCC-CGCGG-----GUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 13052 0.71 0.094763
Target:  5'- cGCGCCGaGuCCGAGGGCuggggcaagGCcaCCGGCGCGu -3'
miRNA:   3'- -UGCGGC-C-GGUUCCCG---------CG--GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 4170 0.7 0.096838
Target:  5'- cGCGCCGuggucgagguguaGCCAGuGGGCGCCgaaaaguuggaauCGGCGCGc -3'
miRNA:   3'- -UGCGGC-------------CGGUU-CCCGCGG-------------GUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 15140 0.7 0.10003
Target:  5'- cAUGCUGGCgGcGGauGCGCCCAGgGCGa -3'
miRNA:   3'- -UGCGGCCGgUuCC--CGCGGGUCgCGCc -5'
26476 3' -65.6 NC_005357.1 + 16371 0.7 0.10003
Target:  5'- uCGCCGaGCgCAuGGagcGCGCCCGccGCGCGGg -3'
miRNA:   3'- uGCGGC-CG-GUuCC---CGCGGGU--CGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 40729 0.7 0.101663
Target:  5'- cACGCCGGCCcacGGCGaauuucucgacuaCCuGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGuucCCGCg------------GGuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 31025 0.7 0.105572
Target:  5'- uUGCCGGCCGAGGcaaucGCGCgggCCAacguGCGCGa -3'
miRNA:   3'- uGCGGCCGGUUCC-----CGCG---GGU----CGCGCc -5'
26476 3' -65.6 NC_005357.1 + 18042 0.7 0.108451
Target:  5'- -gGCgGGCUgcuuGGGGGCcuuaCCGGCGCGGg -3'
miRNA:   3'- ugCGgCCGG----UUCCCGcg--GGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 692 0.7 0.111104
Target:  5'- gGCGCCGGCC--GGGCcgcccaagauaccGCCCAGgauagggGCGGc -3'
miRNA:   3'- -UGCGGCCGGuuCCCG-------------CGGGUCg------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 32551 0.7 0.111402
Target:  5'- cGCGCCuGGCCGAGaagcaGCGCgCCGGUGCc- -3'
miRNA:   3'- -UGCGG-CCGGUUCc----CGCG-GGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 5527 0.7 0.111402
Target:  5'- cACGCCGGCCGcccAGGuucCGCCCAGguCGCc- -3'
miRNA:   3'- -UGCGGCCGGU---UCCc--GCGGGUC--GCGcc -5'
26476 3' -65.6 NC_005357.1 + 40561 0.69 0.114429
Target:  5'- aGCGCCGGCCAcGGGCugaaCCuGCaagacgGCGGc -3'
miRNA:   3'- -UGCGGCCGGUuCCCGcg--GGuCG------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 8996 0.69 0.114429
Target:  5'- uCGCC-GCgCGGGGGCGCuuCCAGCagGCGGc -3'
miRNA:   3'- uGCGGcCG-GUUCCCGCG--GGUCG--CGCC- -5'
26476 3' -65.6 NC_005357.1 + 7080 0.69 0.114429
Target:  5'- gACGCCgcGGCCuacccacGGcGCGCCCAcGCGCa- -3'
miRNA:   3'- -UGCGG--CCGGuu-----CC-CGCGGGU-CGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.