miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 24422 0.66 0.198282
Target:  5'- -aGCCGGCCcgauuugucGGUGCCgC-GCGCGGc -3'
miRNA:   3'- ugCGGCCGGuuc------CCGCGG-GuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 19322 0.66 0.193292
Target:  5'- cCGCUGucGCCGuGGGCGCCgCcguuGGCGuCGGg -3'
miRNA:   3'- uGCGGC--CGGUuCCCGCGG-G----UCGC-GCC- -5'
26476 3' -65.6 NC_005357.1 + 34797 0.67 0.188412
Target:  5'- cUGCaaGGCCAAGGccacGUGUCCGGCGCu- -3'
miRNA:   3'- uGCGg-CCGGUUCC----CGCGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 1303 0.67 0.188412
Target:  5'- cCGCCGcGCCcAGGGCgacggccaccagGCCgacaAGCGCGa -3'
miRNA:   3'- uGCGGC-CGGuUCCCG------------CGGg---UCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 2720 0.67 0.188412
Target:  5'- cACGuuGGCCGgacgcuugAGcGCgGCCCGGCGCu- -3'
miRNA:   3'- -UGCggCCGGU--------UCcCG-CGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 30840 0.67 0.188412
Target:  5'- cCGgCGGCCAGccGGCgGCCCuGgGCGGc -3'
miRNA:   3'- uGCgGCCGGUUc-CCG-CGGGuCgCGCC- -5'
26476 3' -65.6 NC_005357.1 + 37639 0.67 0.188412
Target:  5'- aGCGCCaGCCGGcgugcuGGGCGC--AGUGUGGg -3'
miRNA:   3'- -UGCGGcCGGUU------CCCGCGggUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 4562 0.67 0.188412
Target:  5'- -gGCCGaagucGCCGAGGcGCuGCUCGGUGCGc -3'
miRNA:   3'- ugCGGC-----CGGUUCC-CG-CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 38496 0.67 0.18793
Target:  5'- uCGCUGGCUuucaaacucgcauGGGGGCGCggCCAuGCGUGa -3'
miRNA:   3'- uGCGGCCGG-------------UUCCCGCG--GGU-CGCGCc -5'
26476 3' -65.6 NC_005357.1 + 16169 0.67 0.18793
Target:  5'- cCGaCCaGGCCGGcGGGUGCCCGugccuucggcgacGCGCGc -3'
miRNA:   3'- uGC-GG-CCGGUU-CCCGCGGGU-------------CGCGCc -5'
26476 3' -65.6 NC_005357.1 + 42029 0.67 0.183641
Target:  5'- cCGCCGuGCUgcugguGGGCGCCCuGgGCa- -3'
miRNA:   3'- uGCGGC-CGGuu----CCCGCGGGuCgCGcc -5'
26476 3' -65.6 NC_005357.1 + 31148 0.67 0.183641
Target:  5'- cCGCCuaccuGGCCGAGcgucccaGCGCCgCAGCGCa- -3'
miRNA:   3'- uGCGG-----CCGGUUCc------CGCGG-GUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 8806 0.67 0.183641
Target:  5'- cGCGCCGGUCAGuaccgaucugcuGGGUcgGgCCAGCcgcaacGCGGg -3'
miRNA:   3'- -UGCGGCCGGUU------------CCCG--CgGGUCG------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 38042 0.67 0.183641
Target:  5'- gGC-CCGGCgCGAcGGCGCCUGGCuGCGc -3'
miRNA:   3'- -UGcGGCCG-GUUcCCGCGGGUCG-CGCc -5'
26476 3' -65.6 NC_005357.1 + 35192 0.67 0.183641
Target:  5'- -gGCCGacaucGCCGAGGGUgaGCgCGGCGCa- -3'
miRNA:   3'- ugCGGC-----CGGUUCCCG--CGgGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 36661 0.67 0.18317
Target:  5'- cACGauGGUCAAGGcccuggcgcacucGCuGCCCGGCGCGc -3'
miRNA:   3'- -UGCggCCGGUUCC-------------CG-CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 26975 0.67 0.182231
Target:  5'- aGCuUCGGCCAAGGGCGCgUcaagaacaucaacaAGCuGUGGu -3'
miRNA:   3'- -UGcGGCCGGUUCCCGCGgG--------------UCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 12293 0.67 0.178977
Target:  5'- gACGCggugcaGGCCGGcGGCGUguuCUGGCGCGGc -3'
miRNA:   3'- -UGCGg-----CCGGUUcCCGCG---GGUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 35795 0.67 0.178977
Target:  5'- cACuCCGGCCAAGcGCGCgaagCUGGCgGCGGa -3'
miRNA:   3'- -UGcGGCCGGUUCcCGCG----GGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 36075 0.67 0.174418
Target:  5'- aGCGCCccGGCCuucgggccGGGCGCUUuggcuGGgGCGGa -3'
miRNA:   3'- -UGCGG--CCGGuu------CCCGCGGG-----UCgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.