miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 3' -65.6 NC_005357.1 + 42029 0.67 0.183641
Target:  5'- cCGCCGuGCUgcugguGGGCGCCCuGgGCa- -3'
miRNA:   3'- uGCGGC-CGGuu----CCCGCGGGuCgCGcc -5'
26476 3' -65.6 NC_005357.1 + 41114 0.71 0.08976
Target:  5'- uUGUCGGCCuGGuGGCcgucGCCCugGGCGCGGc -3'
miRNA:   3'- uGCGGCCGGuUC-CCG----CGGG--UCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 40729 0.7 0.101663
Target:  5'- cACGCCGGCCcacGGCGaauuucucgacuaCCuGCGCGGc -3'
miRNA:   3'- -UGCGGCCGGuucCCGCg------------GGuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 40683 0.66 0.224942
Target:  5'- -gGCCGGCCAugacCGCCCGGUGUu- -3'
miRNA:   3'- ugCGGCCGGUucccGCGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 40561 0.69 0.114429
Target:  5'- aGCGCCGGCCAcGGGCugaaCCuGCaagacgGCGGc -3'
miRNA:   3'- -UGCGGCCGGUuCCCGcg--GGuCG------CGCC- -5'
26476 3' -65.6 NC_005357.1 + 40189 0.69 0.134257
Target:  5'- cUGCCGGCCAAG---GCCCGGCGUu- -3'
miRNA:   3'- uGCGGCCGGUUCccgCGGGUCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 38830 0.69 0.127319
Target:  5'- aAUGCgCGGUCAAGGuuagguacGUGaCCCGGCGCGu -3'
miRNA:   3'- -UGCG-GCCGGUUCC--------CGC-GGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 38710 0.67 0.165611
Target:  5'- gGCGUgaaCGGCac-GGGCGCCacgAGCGCGu -3'
miRNA:   3'- -UGCG---GCCGguuCCCGCGGg--UCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 38649 0.69 0.120714
Target:  5'- gGCGCUGGCUuucggcacgaccGAGGcuaCGUCCAGCgGCGGc -3'
miRNA:   3'- -UGCGGCCGG------------UUCCc--GCGGGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 38496 0.67 0.18793
Target:  5'- uCGCUGGCUuucaaacucgcauGGGGGCGCggCCAuGCGUGa -3'
miRNA:   3'- uGCGGCCGG-------------UUCCCGCG--GGU-CGCGCc -5'
26476 3' -65.6 NC_005357.1 + 38042 0.67 0.183641
Target:  5'- gGC-CCGGCgCGAcGGCGCCUGGCuGCGc -3'
miRNA:   3'- -UGcGGCCG-GUUcCCGCGGGUCG-CGCc -5'
26476 3' -65.6 NC_005357.1 + 37736 0.67 0.169964
Target:  5'- uUGCCGGCCAuucucgccGCGCuauCCGGCGCGc -3'
miRNA:   3'- uGCGGCCGGUucc-----CGCG---GGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 37639 0.67 0.188412
Target:  5'- aGCGCCaGCCGGcgugcuGGGCGC--AGUGUGGg -3'
miRNA:   3'- -UGCGGcCGGUU------CCCGCGggUCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 37263 0.66 0.221589
Target:  5'- aACcCUcGCCAAGGGCGUgagcagcgacggccgCCuGCGCGGc -3'
miRNA:   3'- -UGcGGcCGGUUCCCGCG---------------GGuCGCGCC- -5'
26476 3' -65.6 NC_005357.1 + 36661 0.67 0.18317
Target:  5'- cACGauGGUCAAGGcccuggcgcacucGCuGCCCGGCGCGc -3'
miRNA:   3'- -UGCggCCGGUUCC-------------CG-CGGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 36262 0.68 0.149186
Target:  5'- -gGCCcGCUAAGGGUGCCC-GUGCc- -3'
miRNA:   3'- ugCGGcCGGUUCCCGCGGGuCGCGcc -5'
26476 3' -65.6 NC_005357.1 + 36075 0.67 0.174418
Target:  5'- aGCGCCccGGCCuucgggccGGGCGCUUuggcuGGgGCGGa -3'
miRNA:   3'- -UGCGG--CCGGuu------CCCGCGGG-----UCgCGCC- -5'
26476 3' -65.6 NC_005357.1 + 35795 0.67 0.178977
Target:  5'- cACuCCGGCCAAGcGCGCgaagCUGGCgGCGGa -3'
miRNA:   3'- -UGcGGCCGGUUCcCGCG----GGUCG-CGCC- -5'
26476 3' -65.6 NC_005357.1 + 35240 0.66 0.224942
Target:  5'- cGCGCuguccCGGCUGcgucAGGGCG-UCAGCGCGu -3'
miRNA:   3'- -UGCG-----GCCGGU----UCCCGCgGGUCGCGCc -5'
26476 3' -65.6 NC_005357.1 + 35192 0.67 0.183641
Target:  5'- -gGCCGacaucGCCGAGGGUgaGCgCGGCGCa- -3'
miRNA:   3'- ugCGGC-----CGGUUCCCG--CGgGUCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.