Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26476 | 5' | -55.8 | NC_005357.1 | + | 37645 | 0.71 | 0.31987 |
Target: 5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3' miRNA: 3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 5323 | 0.66 | 0.628104 |
Target: 5'- aGGCCGcgaGCA-CGuGGCGCAGcaugGCAu- -3' miRNA: 3'- -CCGGC---UGUaGCuCCGCGUCaa--CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 5251 | 0.66 | 0.628104 |
Target: 5'- cGGCCGGCAggUCGGGGUcgGCAa-UGCGu- -3' miRNA: 3'- -CCGGCUGU--AGCUCCG--CGUcaACGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 26678 | 0.66 | 0.583509 |
Target: 5'- uGG-CGGCAaCGAGGUGCGGUaUGUcGAg -3' miRNA: 3'- -CCgGCUGUaGCUCCGCGUCA-ACGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 27492 | 0.66 | 0.628104 |
Target: 5'- cGCCGA-GUUGGGcGCGCAGUcgGCAc- -3' miRNA: 3'- cCGGCUgUAGCUC-CGCGUCAa-CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 2365 | 0.66 | 0.628104 |
Target: 5'- gGGCaaaCGGCAacgguUCGAGGCGCAcGgcaugGCGGu -3' miRNA: 3'- -CCG---GCUGU-----AGCUCCGCGU-Caa---CGUCu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 35191 | 0.75 | 0.18931 |
Target: 5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3' miRNA: 3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 7817 | 0.77 | 0.139481 |
Target: 5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3' miRNA: 3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 19164 | 0.66 | 0.632577 |
Target: 5'- cGCCGACAccgaccugaccaugcUguuccccagCGAGGCGCGGUcGguGGc -3' miRNA: 3'- cCGGCUGU---------------A---------GCUCCGCGUCAaCguCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 29279 | 1.11 | 0.000452 |
Target: 5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3' miRNA: 3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 17449 | 0.66 | 0.583509 |
Target: 5'- cGCCaGCAUCGAGGC-CAGgUGCc-- -3' miRNA: 3'- cCGGcUGUAGCUCCGcGUCaACGucu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 4172 | 0.74 | 0.222648 |
Target: 5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3' miRNA: 3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 35179 | 0.7 | 0.352937 |
Target: 5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3' miRNA: 3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 2436 | 0.7 | 0.361573 |
Target: 5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3' miRNA: 3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 39161 | 0.69 | 0.435771 |
Target: 5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3' miRNA: 3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 16595 | 0.68 | 0.485324 |
Target: 5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3' miRNA: 3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 36352 | 0.66 | 0.594618 |
Target: 5'- cGCuCGACGacuUCGAGGCGguGUgaugaGCAc- -3' miRNA: 3'- cCG-GCUGU---AGCUCCGCguCAa----CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 6371 | 0.67 | 0.518021 |
Target: 5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3' miRNA: 3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 19634 | 0.66 | 0.583509 |
Target: 5'- gGGCCgcGACAUCGGccaGCGUcgGGUUGguGGu -3' miRNA: 3'- -CCGG--CUGUAGCUc--CGCG--UCAACguCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 8127 | 0.66 | 0.583509 |
Target: 5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3' miRNA: 3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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