miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 41751 0.74 0.124936
Target:  5'- cGGCCgGCGCCGCCguagGCGGC-CUGGUg -3'
miRNA:   3'- -UCGGaUGCGGCGGa---UGUUGcGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 14900 0.74 0.124936
Target:  5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3'
miRNA:   3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 21179 0.74 0.124936
Target:  5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3'
miRNA:   3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 39975 0.74 0.12738
Target:  5'- cGCCUugugcaacaucgugGCGCCGaUCUuCGAgGCCGGCCu -3'
miRNA:   3'- uCGGA--------------UGCGGC-GGAuGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 35954 0.74 0.12844
Target:  5'- gGGCCUGCGCgGCgUGCAguuccuGCGCgaCGGCg -3'
miRNA:   3'- -UCGGAUGCGgCGgAUGU------UGCG--GCCGg -5'
26477 3' -59.7 NC_005357.1 + 23965 0.74 0.12844
Target:  5'- cGGCCgACGCCGCCg---GCGCCGcGaCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguUGCGGC-C-GG- -5'
26477 3' -59.7 NC_005357.1 + 5121 0.73 0.135722
Target:  5'- cGGCUgGCGCCGUugaaCUGCAACGUgccgcgcaggCGGCCg -3'
miRNA:   3'- -UCGGaUGCGGCG----GAUGUUGCG----------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33207 0.73 0.143382
Target:  5'- cGCCgggcGCGCCGCagaACGuGCGCCGcGCCg -3'
miRNA:   3'- uCGGa---UGCGGCGga-UGU-UGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 41805 0.73 0.143382
Target:  5'- cGCCggACGCCGUgUccACGGCGCUgcuGGCCg -3'
miRNA:   3'- uCGGa-UGCGGCGgA--UGUUGCGG---CCGG- -5'
26477 3' -59.7 NC_005357.1 + 19924 0.73 0.143382
Target:  5'- cAGCUUGuCGCCGCCgaACuccuUGUCGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa-UGuu--GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11997 0.73 0.147359
Target:  5'- uGGCCUuuuccACGUCgGCCaGCAGCGC-GGCCg -3'
miRNA:   3'- -UCGGA-----UGCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37294 0.73 0.147359
Target:  5'- cGCCUGCGCgGCacguUGCAguucaacgGCGCCaGCCg -3'
miRNA:   3'- uCGGAUGCGgCGg---AUGU--------UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 35821 0.73 0.151435
Target:  5'- cGGCggaCUACGCCauGCuCUACGuggUGCCGGCCg -3'
miRNA:   3'- -UCG---GAUGCGG--CG-GAUGUu--GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 17057 0.73 0.151435
Target:  5'- gGGCUUcUGgCGCCUGCccgGugGCCGGCUa -3'
miRNA:   3'- -UCGGAuGCgGCGGAUG---UugCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23198 0.72 0.162958
Target:  5'- gGGCCUgACGCCGCgCUuCAACaGCCuguccgcggagaacGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCG-GAuGUUG-CGG--------------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 2141 0.72 0.164286
Target:  5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3'
miRNA:   3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5'
26477 3' -59.7 NC_005357.1 + 40961 0.72 0.167423
Target:  5'- cGGCCUGCcaggagGCCGCCgACcGCGCCGucaagaagguguuuGCCa -3'
miRNA:   3'- -UCGGAUG------CGGCGGaUGuUGCGGC--------------CGG- -5'
26477 3' -59.7 NC_005357.1 + 40541 0.72 0.168783
Target:  5'- uGCUguuCGCCcacCCggcCAGCGCCGGCCa -3'
miRNA:   3'- uCGGau-GCGGc--GGau-GUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 3539 0.72 0.168783
Target:  5'- uGCCguuccagGCGCCGCCgaauagcGCAGCaGCgGGCUg -3'
miRNA:   3'- uCGGa------UGCGGCGGa------UGUUG-CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25485 0.72 0.168783
Target:  5'- cGGCggcACGCUGCUggACGGCGCCGuGCCc -3'
miRNA:   3'- -UCGga-UGCGGCGGa-UGUUGCGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.