miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26479 3' -53.6 NC_005357.1 + 37129 0.66 0.727848
Target:  5'- cCUGGAAaauauCGACgCCGugGCCGaCAAc -3'
miRNA:   3'- uGACCUU-----GUUGgGGCugCGGUaGUUa -5'
26479 3' -53.6 NC_005357.1 + 2421 0.66 0.727848
Target:  5'- gACUGGAACcACCUCGauuugaagGCGCCGa---- -3'
miRNA:   3'- -UGACCUUGuUGGGGC--------UGCGGUaguua -5'
26479 3' -53.6 NC_005357.1 + 29982 0.66 0.727848
Target:  5'- cCUGGAuGCAGCCgUCGAacggGCCAUCGu- -3'
miRNA:   3'- uGACCU-UGUUGG-GGCUg---CGGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 11857 0.66 0.727848
Target:  5'- cCUGGGcgAACCCCG-CGCCAauaUCGc- -3'
miRNA:   3'- uGACCUugUUGGGGCuGCGGU---AGUua -5'
26479 3' -53.6 NC_005357.1 + 11826 0.66 0.727848
Target:  5'- gACUGGAACAGaCCggCCG-CGCCG-CGGUu -3'
miRNA:   3'- -UGACCUUGUU-GG--GGCuGCGGUaGUUA- -5'
26479 3' -53.6 NC_005357.1 + 4378 0.66 0.716749
Target:  5'- --cGGAugcGCAGCCa-GGCGCCGUCGc- -3'
miRNA:   3'- ugaCCU---UGUUGGggCUGCGGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 24039 0.66 0.716749
Target:  5'- -gUGGcc--GCCaCCGGCGCCAUCGGc -3'
miRNA:   3'- ugACCuuguUGG-GGCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 9169 0.66 0.705559
Target:  5'- gGCcGGcAGCGACaaCuuGGCGCCGUCGAc -3'
miRNA:   3'- -UGaCC-UUGUUG--GggCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 34367 0.66 0.705559
Target:  5'- --aGGcAGCGACCUgGGCGCgCGUCAu- -3'
miRNA:   3'- ugaCC-UUGUUGGGgCUGCG-GUAGUua -5'
26479 3' -53.6 NC_005357.1 + 24767 0.66 0.694292
Target:  5'- ------cCAGCCcgCCGACGCCAUCAAg -3'
miRNA:   3'- ugaccuuGUUGG--GGCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 16379 0.66 0.679548
Target:  5'- cGCaUGGAGCGcgcccgccgcgcggGCUuuGAUGCCAUCGc- -3'
miRNA:   3'- -UG-ACCUUGU--------------UGGggCUGCGGUAGUua -5'
26479 3' -53.6 NC_005357.1 + 39987 0.66 0.671573
Target:  5'- cCUGGGccGCAGuuUCGGCGCCuUCAAa -3'
miRNA:   3'- uGACCU--UGUUggGGCUGCGGuAGUUa -5'
26479 3' -53.6 NC_005357.1 + 26964 0.67 0.660147
Target:  5'- aACUGGAcgGCAGCUUCGGCcaaggGCgCGUCAAg -3'
miRNA:   3'- -UGACCU--UGUUGGGGCUG-----CG-GUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 6374 0.67 0.625746
Target:  5'- cGCUGGGuuACAccaggucggccGCCgCGGCGCCcUCGGUg -3'
miRNA:   3'- -UGACCU--UGU-----------UGGgGCUGCGGuAGUUA- -5'
26479 3' -53.6 NC_005357.1 + 30267 0.67 0.625746
Target:  5'- --cGGAcACuGACCCCGACGCCuacgCGGa -3'
miRNA:   3'- ugaCCU-UG-UUGGGGCUGCGGua--GUUa -5'
26479 3' -53.6 NC_005357.1 + 18309 0.67 0.614276
Target:  5'- gGCUGGAcuACGACCCCuACGCgCG-CAu- -3'
miRNA:   3'- -UGACCU--UGUUGGGGcUGCG-GUaGUua -5'
26479 3' -53.6 NC_005357.1 + 36135 0.68 0.602823
Target:  5'- cACcGGAGauaAGCCCCGGCGCCc-CAGc -3'
miRNA:   3'- -UGaCCUUg--UUGGGGCUGCGGuaGUUa -5'
26479 3' -53.6 NC_005357.1 + 38602 0.68 0.602823
Target:  5'- cGCUGGAuuggucgcaacgGCGcCCCCGAcCGCCugGUCAu- -3'
miRNA:   3'- -UGACCU------------UGUuGGGGCU-GCGG--UAGUua -5'
26479 3' -53.6 NC_005357.1 + 41684 0.68 0.591398
Target:  5'- gACUGGAAaGACCuggCCGGCGUUGUCGGc -3'
miRNA:   3'- -UGACCUUgUUGG---GGCUGCGGUAGUUa -5'
26479 3' -53.6 NC_005357.1 + 17491 0.68 0.591398
Target:  5'- --cGGAcuACAACCCCGAgGaCAUCAu- -3'
miRNA:   3'- ugaCCU--UGUUGGGGCUgCgGUAGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.