Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26479 | 5' | -47.9 | NC_005357.1 | + | 37334 | 0.66 | 0.973043 |
Target: 5'- cCGGaCGCu---GGGCCGGccGCCUguUCCa -3' miRNA: 3'- -GCUaGCGuauuUCCGGCUu-UGGA--AGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 29979 | 0.66 | 0.972731 |
Target: 5'- cCGAUCuugaGCAUGAAGGUCGGcgacaucGACagcgCCa -3' miRNA: 3'- -GCUAG----CGUAUUUCCGGCU-------UUGgaa-GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 19091 | 0.66 | 0.969805 |
Target: 5'- gCGAUUGCAggccGGCCugcGAAcCCUUCg -3' miRNA: 3'- -GCUAGCGUauuuCCGG---CUUuGGAAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 14915 | 0.66 | 0.966299 |
Target: 5'- cCGAcCGCGccgagaagcUGgcGGCCGAGGCCg-CCg -3' miRNA: 3'- -GCUaGCGU---------AUuuCCGGCUUUGGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 34545 | 0.67 | 0.958444 |
Target: 5'- aGGgcaGCAUuucccgaccAucGGCCGAAGCCUgaaCCg -3' miRNA: 3'- gCUag-CGUA---------UuuCCGGCUUUGGAa--GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 23568 | 0.67 | 0.958444 |
Target: 5'- cCGAaCGUGggcauGGGCCGcccGGCCUUCUa -3' miRNA: 3'- -GCUaGCGUauu--UCCGGCu--UUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 31715 | 0.67 | 0.958021 |
Target: 5'- aCGA-CGCAUucaagcaAucGGCCGAGGCCgugcgcgcugCCg -3' miRNA: 3'- -GCUaGCGUA-------UuuCCGGCUUUGGaa--------GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 41809 | 0.67 | 0.954081 |
Target: 5'- ---cCGCGccGAGGCUGAGGCCaUCa -3' miRNA: 3'- gcuaGCGUauUUCCGGCUUUGGaAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 4368 | 0.67 | 0.944452 |
Target: 5'- cCGGUgCGCGUGAAggcgacGGCCGAcuugucGGCCUUg- -3' miRNA: 3'- -GCUA-GCGUAUUU------CCGGCU------UUGGAAgg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 4813 | 0.67 | 0.944452 |
Target: 5'- ----aGCuuGUAGAGGUCGggGCCggcgCCg -3' miRNA: 3'- gcuagCG--UAUUUCCGGCuuUGGaa--GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 1569 | 0.67 | 0.944452 |
Target: 5'- gGAUgGgCAUAuccuuguaguGGCCGccGCCUUCCu -3' miRNA: 3'- gCUAgC-GUAUuu--------CCGGCuuUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 13294 | 0.67 | 0.939176 |
Target: 5'- cCGAUUGCAgcgc-GCCGggGCCggCg -3' miRNA: 3'- -GCUAGCGUauuucCGGCuuUGGaaGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 24566 | 0.67 | 0.939176 |
Target: 5'- gCGAUgGCG---AGGCCGGccacggucgGGCCgUCCg -3' miRNA: 3'- -GCUAgCGUauuUCCGGCU---------UUGGaAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 5290 | 0.68 | 0.933588 |
Target: 5'- uCGAUugcUGCAUGucuggcAGGUCGAGGCCguaggCCg -3' miRNA: 3'- -GCUA---GCGUAUu-----UCCGGCUUUGGaa---GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 32362 | 0.68 | 0.921472 |
Target: 5'- gCGGUCGCcgccGAGGCCccGGCCgcCCa -3' miRNA: 3'- -GCUAGCGuau-UUCCGGcuUUGGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 8610 | 0.68 | 0.921472 |
Target: 5'- gGAUgGCGUAGgcguGGCCGGuacgcCCUUCg -3' miRNA: 3'- gCUAgCGUAUUu---CCGGCUuu---GGAAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 20318 | 0.68 | 0.921472 |
Target: 5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3' miRNA: 3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 32890 | 0.68 | 0.914944 |
Target: 5'- aGAUCGCAcu--GGCCGAAcaggGCCg--- -3' miRNA: 3'- gCUAGCGUauuuCCGGCUU----UGGaagg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 4659 | 0.68 | 0.914944 |
Target: 5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3' miRNA: 3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 24117 | 0.68 | 0.908103 |
Target: 5'- uGcgCGCGUAGGGGUCGuaguCCagCCg -3' miRNA: 3'- gCuaGCGUAUUUCCGGCuuu-GGaaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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