Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26479 | 5' | -47.9 | NC_005357.1 | + | 28563 | 1.15 | 0.002072 |
Target: 5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3' miRNA: 3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 34984 | 0.77 | 0.464929 |
Target: 5'- --uUCGCGcGAAGGCCGAAGCCgaacugcuggCCg -3' miRNA: 3'- gcuAGCGUaUUUCCGGCUUUGGaa--------GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 29346 | 0.77 | 0.497493 |
Target: 5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3' miRNA: 3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 33780 | 0.76 | 0.508575 |
Target: 5'- cCGAccgCGCgAUGAAGGCCGGcGACCUcgCCa -3' miRNA: 3'- -GCUa--GCG-UAUUUCCGGCU-UUGGAa-GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 7136 | 0.73 | 0.705299 |
Target: 5'- gCGGUUGCAUAAGGGCgcucaugacguUGAAGCCcaggCCc -3' miRNA: 3'- -GCUAGCGUAUUUCCG-----------GCUUUGGaa--GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 19256 | 0.73 | 0.705299 |
Target: 5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3' miRNA: 3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 19196 | 0.73 | 0.682187 |
Target: 5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3' miRNA: 3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 41381 | 0.72 | 0.772239 |
Target: 5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3' miRNA: 3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 33983 | 0.71 | 0.803679 |
Target: 5'- uCGAUCuGCGcAAGGGCCaAAGCCUcaaggCCg -3' miRNA: 3'- -GCUAG-CGUaUUUCCGGcUUUGGAa----GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 28622 | 0.71 | 0.813768 |
Target: 5'- cCGggCGCGgauGAGGCCG--GCCagUUCCg -3' miRNA: 3'- -GCuaGCGUau-UUCCGGCuuUGG--AAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 10794 | 0.7 | 0.858091 |
Target: 5'- gGAUUGCAUGuacuGcugcgccucggcgcGGCUGAAuCCUUCCg -3' miRNA: 3'- gCUAGCGUAUu---U--------------CCGGCUUuGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 9498 | 0.7 | 0.823641 |
Target: 5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3' miRNA: 3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 41069 | 0.69 | 0.900952 |
Target: 5'- uCGGUCGCcgGAugcgcaAGGCCGccGACCacggcUUCCu -3' miRNA: 3'- -GCUAGCGuaUU------UCCGGCu-UUGG-----AAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 15456 | 0.69 | 0.877688 |
Target: 5'- uGA-CGCGcccuuGGCCGAAGCUgccgUCCa -3' miRNA: 3'- gCUaGCGUauuu-CCGGCUUUGGa---AGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 32890 | 0.68 | 0.914944 |
Target: 5'- aGAUCGCAcu--GGCCGAAcaggGCCg--- -3' miRNA: 3'- gCUAGCGUauuuCCGGCUU----UGGaagg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 24117 | 0.68 | 0.908103 |
Target: 5'- uGcgCGCGUAGGGGUCGuaguCCagCCg -3' miRNA: 3'- gCuaGCGUAUUUCCGGCuuu-GGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 20318 | 0.68 | 0.921472 |
Target: 5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3' miRNA: 3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 32362 | 0.68 | 0.921472 |
Target: 5'- gCGGUCGCcgccGAGGCCccGGCCgcCCa -3' miRNA: 3'- -GCUAGCGuau-UUCCGGcuUUGGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 8610 | 0.68 | 0.921472 |
Target: 5'- gGAUgGCGUAGgcguGGCCGGuacgcCCUUCg -3' miRNA: 3'- gCUAgCGUAUUu---CCGGCUuu---GGAAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 4659 | 0.68 | 0.914944 |
Target: 5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3' miRNA: 3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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