Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 27468 | 1.11 | 0.00065 |
Target: 5'- gACCGGCGACUUCAACGCGAGCAUCGCc -3' miRNA: 3'- -UGGCCGCUGAAGUUGCGCUCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 17635 | 0.96 | 0.007191 |
Target: 5'- -aCGGCGACUUCAACGCGGGCAUCGa -3' miRNA: 3'- ugGCCGCUGAAGUUGCGCUCGUAGCg -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 8191 | 0.79 | 0.118799 |
Target: 5'- uGCCGGCGAUUUCAuCGCGcacGGCcUCGUa -3' miRNA: 3'- -UGGCCGCUGAAGUuGCGC---UCGuAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 28669 | 0.75 | 0.219018 |
Target: 5'- uGCCGGCGGCcucgcCAGCGCG-GCG-CGCc -3' miRNA: 3'- -UGGCCGCUGaa---GUUGCGCuCGUaGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 28758 | 0.75 | 0.219018 |
Target: 5'- aGCgCGGUGcGCUucUCGGCGCGcacGGCGUCGCg -3' miRNA: 3'- -UG-GCCGC-UGA--AGUUGCGC---UCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 12304 | 0.75 | 0.224967 |
Target: 5'- gGCCGGCGGCgugUUcuGGCGCGGccuCAUCGCc -3' miRNA: 3'- -UGGCCGCUGa--AG--UUGCGCUc--GUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 8650 | 0.75 | 0.237276 |
Target: 5'- cGCCGGC--CUUCAucGCGCGgucGGCAUUGCg -3' miRNA: 3'- -UGGCCGcuGAAGU--UGCGC---UCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 30565 | 0.74 | 0.250145 |
Target: 5'- cAUgGGCGAUaUUGGCGCGGGguUCGCc -3' miRNA: 3'- -UGgCCGCUGaAGUUGCGCUCguAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 18765 | 0.74 | 0.263584 |
Target: 5'- uGCCGGCGAUUUCuuccauCGUcAGCGUCGa -3' miRNA: 3'- -UGGCCGCUGAAGuu----GCGcUCGUAGCg -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 27384 | 0.73 | 0.277604 |
Target: 5'- uGCCcGCa---UCAACGCGGGCAUCGCc -3' miRNA: 3'- -UGGcCGcugaAGUUGCGCUCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 24182 | 0.73 | 0.299738 |
Target: 5'- uUCGGCGugUcCAugaGCGCGAGCA-CGUa -3' miRNA: 3'- uGGCCGCugAaGU---UGCGCUCGUaGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 25741 | 0.72 | 0.315238 |
Target: 5'- cACCGGCGGCagC-ACGCuGGGCG-CGCu -3' miRNA: 3'- -UGGCCGCUGaaGuUGCG-CUCGUaGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 16439 | 0.72 | 0.315238 |
Target: 5'- cGCCGGCGGCgUUgAACaCG-GCGUCGUa -3' miRNA: 3'- -UGGCCGCUG-AAgUUGcGCuCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 14601 | 0.72 | 0.315238 |
Target: 5'- gGCCGGCGc---CAcCGCGGGCAgcgCGCg -3' miRNA: 3'- -UGGCCGCugaaGUuGCGCUCGUa--GCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 35983 | 0.72 | 0.331336 |
Target: 5'- -aCGGCGACgcCuuCGCGGGCggugguGUCGCg -3' miRNA: 3'- ugGCCGCUGaaGuuGCGCUCG------UAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 19052 | 0.72 | 0.331336 |
Target: 5'- cGCCGGCGGCgucgaUCAGCGUGucC-UCGCc -3' miRNA: 3'- -UGGCCGCUGa----AGUUGCGCucGuAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 16773 | 0.72 | 0.339609 |
Target: 5'- cACCGGCGACgUgAAgGCGAugGUCGCc -3' miRNA: 3'- -UGGCCGCUGaAgUUgCGCUcgUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 6972 | 0.72 | 0.355737 |
Target: 5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3' miRNA: 3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 29720 | 0.72 | 0.36007 |
Target: 5'- gGCCgGGCGACUugaacagccaggcuaUCAAgGCGGGCcUCGa -3' miRNA: 3'- -UGG-CCGCUGA---------------AGUUgCGCUCGuAGCg -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 18876 | 0.71 | 0.374181 |
Target: 5'- uGCCGGCGAUgUCGGC-CGAGgcCAUCGa -3' miRNA: 3'- -UGGCCGCUGaAGUUGcGCUC--GUAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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