Results 1 - 20 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 35180 | 0.69 | 0.49112 |
Target: 5'- gGCCGGCGACaUCGGCccGCGccaguGGCcgaaGUUGCa -3' miRNA: 3'- -UGGCCGCUGaAGUUG--CGC-----UCG----UAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 27500 | 0.71 | 0.40163 |
Target: 5'- uGCCGGCGGCcUCGGcCGCcAGCuucucggCGCg -3' miRNA: 3'- -UGGCCGCUGaAGUU-GCGcUCGua-----GCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 9316 | 0.7 | 0.430327 |
Target: 5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3' miRNA: 3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 35883 | 0.7 | 0.440156 |
Target: 5'- cGCgGGCuGCUacgUCAACGCcAGCAUCGa -3' miRNA: 3'- -UGgCCGcUGA---AGUUGCGcUCGUAGCg -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 35300 | 0.7 | 0.450112 |
Target: 5'- aGCCGaCGACUUCGcggACGUGAGCGgggaaacCGUg -3' miRNA: 3'- -UGGCcGCUGAAGU---UGCGCUCGUa------GCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 30422 | 0.69 | 0.470389 |
Target: 5'- gGCaUGGCGAUg--AGCGCGGGCAgggccUCGCc -3' miRNA: 3'- -UG-GCCGCUGaagUUGCGCUCGU-----AGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 26269 | 0.69 | 0.4807 |
Target: 5'- cGCCGGCcuggUCGGCuCGcGCAUCGCg -3' miRNA: 3'- -UGGCCGcugaAGUUGcGCuCGUAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 4261 | 0.69 | 0.49112 |
Target: 5'- uGCCGGCcg--UCAGCGCcGGCAUgGUg -3' miRNA: 3'- -UGGCCGcugaAGUUGCGcUCGUAgCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 28055 | 0.69 | 0.49112 |
Target: 5'- gUCGGCGACggucugcUCGAacaGCGGGCAgguggcCGCg -3' miRNA: 3'- uGGCCGCUGa------AGUUg--CGCUCGUa-----GCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 9735 | 0.71 | 0.40163 |
Target: 5'- cGCgGGCGaACUgcUCGugGUGGGCG-CGCu -3' miRNA: 3'- -UGgCCGC-UGA--AGUugCGCUCGUaGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 16773 | 0.72 | 0.339609 |
Target: 5'- cACCGGCGACgUgAAgGCGAugGUCGCc -3' miRNA: 3'- -UGGCCGCUGaAgUUgCGCUcgUAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 35983 | 0.72 | 0.331336 |
Target: 5'- -aCGGCGACgcCuuCGCGGGCggugguGUCGCg -3' miRNA: 3'- ugGCCGCUGaaGuuGCGCUCG------UAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 28669 | 0.75 | 0.219018 |
Target: 5'- uGCCGGCGGCcucgcCAGCGCG-GCG-CGCc -3' miRNA: 3'- -UGGCCGCUGaa---GUUGCGCuCGUaGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 28758 | 0.75 | 0.219018 |
Target: 5'- aGCgCGGUGcGCUucUCGGCGCGcacGGCGUCGCg -3' miRNA: 3'- -UG-GCCGC-UGA--AGUUGCGC---UCGUAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 8650 | 0.75 | 0.237276 |
Target: 5'- cGCCGGC--CUUCAucGCGCGgucGGCAUUGCg -3' miRNA: 3'- -UGGCCGcuGAAGU--UGCGC---UCGUAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 18765 | 0.74 | 0.263584 |
Target: 5'- uGCCGGCGAUUUCuuccauCGUcAGCGUCGa -3' miRNA: 3'- -UGGCCGCUGAAGuu----GCGcUCGUAGCg -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 24182 | 0.73 | 0.299738 |
Target: 5'- uUCGGCGugUcCAugaGCGCGAGCA-CGUa -3' miRNA: 3'- uGGCCGCugAaGU---UGCGCUCGUaGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 25741 | 0.72 | 0.315238 |
Target: 5'- cACCGGCGGCagC-ACGCuGGGCG-CGCu -3' miRNA: 3'- -UGGCCGCUGaaGuUGCG-CUCGUaGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 16439 | 0.72 | 0.315238 |
Target: 5'- cGCCGGCGGCgUUgAACaCG-GCGUCGUa -3' miRNA: 3'- -UGGCCGCUG-AAgUUGcGCuCGUAGCG- -5' |
|||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 19052 | 0.72 | 0.331336 |
Target: 5'- cGCCGGCGGCgucgaUCAGCGUGucC-UCGCc -3' miRNA: 3'- -UGGCCGCUGa----AGUUGCGCucGuAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home