Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26482 | 3' | -54.8 | NC_005357.1 | + | 1042 | 0.69 | 0.512264 |
Target: 5'- gGCCGGCGGCagcaugUCGcCGCGAaccgGCGUC-Ca -3' miRNA: 3'- -UGGCCGCUGa-----AGUuGCGCU----CGUAGcG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 1372 | 0.67 | 0.599934 |
Target: 5'- uCCGGCGACcgaAGCGCaAGUccUCGCg -3' miRNA: 3'- uGGCCGCUGaagUUGCGcUCGu-AGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 2255 | 0.7 | 0.424491 |
Target: 5'- gGCCGGC-AgUUCGACGCGcaccacguugacgauGGguUCGCu -3' miRNA: 3'- -UGGCCGcUgAAGUUGCGC---------------UCguAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 2726 | 0.66 | 0.655912 |
Target: 5'- gGCCGGaCG-CUUgAGCGCG-GCccggCGCu -3' miRNA: 3'- -UGGCC-GCuGAAgUUGCGCuCGua--GCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 4018 | 0.66 | 0.667082 |
Target: 5'- cGCCGGCcACcagcgUCAugccGCGCGGGUcgagCGCa -3' miRNA: 3'- -UGGCCGcUGa----AGU----UGCGCUCGua--GCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 4178 | 0.7 | 0.420627 |
Target: 5'- aGCCGGCcGCcUCgAugGCGGGCAUguuggcCGCg -3' miRNA: 3'- -UGGCCGcUGaAG-UugCGCUCGUA------GCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 4261 | 0.69 | 0.49112 |
Target: 5'- uGCCGGCcg--UCAGCGCcGGCAUgGUg -3' miRNA: 3'- -UGGCCGcugaAGUUGCGcUCGUAgCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 5647 | 0.66 | 0.700342 |
Target: 5'- uGCUGGUGGCUg-GACGCGGuuuGCAgaacaGCa -3' miRNA: 3'- -UGGCCGCUGAagUUGCGCU---CGUag---CG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 6972 | 0.72 | 0.355737 |
Target: 5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3' miRNA: 3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 7240 | 0.67 | 0.633515 |
Target: 5'- uUCGGCcACU--GGCGCGGGCcgauGUCGCc -3' miRNA: 3'- uGGCCGcUGAagUUGCGCUCG----UAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 7365 | 0.66 | 0.689308 |
Target: 5'- cUCGGCGuCguucgucCAGCgGCGGGCAcCGCg -3' miRNA: 3'- uGGCCGCuGaa-----GUUG-CGCUCGUaGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 7433 | 0.67 | 0.622309 |
Target: 5'- gGCCGGCcagcaguucGGCUUCGgccuucGCGCGAaugGCcUUGCa -3' miRNA: 3'- -UGGCCG---------CUGAAGU------UGCGCU---CGuAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 7785 | 0.66 | 0.700342 |
Target: 5'- cGCCGGCGuccaccCUUCGcCGCccAGCAggCGCu -3' miRNA: 3'- -UGGCCGCu-----GAAGUuGCGc-UCGUa-GCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 8191 | 0.79 | 0.118799 |
Target: 5'- uGCCGGCGAUUUCAuCGCGcacGGCcUCGUa -3' miRNA: 3'- -UGGCCGCUGAAGUuGCGC---UCGuAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 8527 | 0.66 | 0.700342 |
Target: 5'- cGCCGGCGaACUU--GCcCaGGUAUCGCa -3' miRNA: 3'- -UGGCCGC-UGAAguUGcGcUCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 8650 | 0.75 | 0.237276 |
Target: 5'- cGCCGGC--CUUCAucGCGCGgucGGCAUUGCg -3' miRNA: 3'- -UGGCCGcuGAAGU--UGCGC---UCGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 9312 | 0.66 | 0.701442 |
Target: 5'- -aCGGCGACauucagggccuugggUUCAugGgCGAggauguaggccgccGCGUCGCu -3' miRNA: 3'- ugGCCGCUG---------------AAGUugC-GCU--------------CGUAGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 9316 | 0.7 | 0.430327 |
Target: 5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3' miRNA: 3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 9735 | 0.71 | 0.40163 |
Target: 5'- cGCgGGCGaACUgcUCGugGUGGGCG-CGCu -3' miRNA: 3'- -UGgCCGC-UGA--AGUugCGCUCGUaGCG- -5' |
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26482 | 3' | -54.8 | NC_005357.1 | + | 9787 | 0.7 | 0.460191 |
Target: 5'- -gCGGCGccgaACUUCGAcaggacagcgacCGCG-GCGUCGCg -3' miRNA: 3'- ugGCCGC----UGAAGUU------------GCGCuCGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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