miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 3' -50.3 NC_005357.1 + 17434 0.66 0.908968
Target:  5'- --cUUGAGCAgugGCCCcgccaGCAUCGAgGCc -3'
miRNA:   3'- gucAGCUUGUaa-CGGG-----CGUAGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 4924 0.66 0.908968
Target:  5'- -cGUCGGcaGCGaUGCCCGCGaCGGucUGCa -3'
miRNA:   3'- guCAGCU--UGUaACGGGCGUaGUU--GCG- -5'
26483 3' -50.3 NC_005357.1 + 1506 0.66 0.908968
Target:  5'- uGGUCGGACAUggcGCCCcCuuauUCGcCGCc -3'
miRNA:   3'- gUCAGCUUGUAa--CGGGcGu---AGUuGCG- -5'
26483 3' -50.3 NC_005357.1 + 39370 0.66 0.904781
Target:  5'- aAGUgGGgcGCAUucucggcuccuggauUGCCCGCGUgAAuCGCa -3'
miRNA:   3'- gUCAgCU--UGUA---------------ACGGGCGUAgUU-GCG- -5'
26483 3' -50.3 NC_005357.1 + 12430 0.66 0.90193
Target:  5'- gCAGUUgGAGCAcgaugGCCCGU-UCGACGg -3'
miRNA:   3'- -GUCAG-CUUGUaa---CGGGCGuAGUUGCg -5'
26483 3' -50.3 NC_005357.1 + 8529 0.66 0.90193
Target:  5'- cCGG-CGAAC-UUGCCCagGUAUCGcaggccGCGCu -3'
miRNA:   3'- -GUCaGCUUGuAACGGG--CGUAGU------UGCG- -5'
26483 3' -50.3 NC_005357.1 + 2244 0.66 0.90193
Target:  5'- -cGcCGGGCcuugGCCgGCAguUCGACGCg -3'
miRNA:   3'- guCaGCUUGuaa-CGGgCGU--AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 38241 0.66 0.894593
Target:  5'- gCGGcC-AACA-UGCCCGCcAUCGAgGCg -3'
miRNA:   3'- -GUCaGcUUGUaACGGGCG-UAGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 7950 0.66 0.88696
Target:  5'- --uUCcGACAgcUUGCCCGUGgccUCGGCGCg -3'
miRNA:   3'- gucAGcUUGU--AACGGGCGU---AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 39681 0.66 0.88696
Target:  5'- uGGUCG-GCAc-GCCCGag-CAGCGCc -3'
miRNA:   3'- gUCAGCuUGUaaCGGGCguaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 37358 0.66 0.88696
Target:  5'- gCGGUCG-GCAaUGCCgacaaCAUCAAUGCa -3'
miRNA:   3'- -GUCAGCuUGUaACGGgc---GUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 6485 0.66 0.879038
Target:  5'- -cGcCGcGCAg-GCCCGCAUUcACGCg -3'
miRNA:   3'- guCaGCuUGUaaCGGGCGUAGuUGCG- -5'
26483 3' -50.3 NC_005357.1 + 21202 0.66 0.879038
Target:  5'- uGGUCuGcGCGUUGCuuGCGgauaAGCGCc -3'
miRNA:   3'- gUCAG-CuUGUAACGggCGUag--UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 33885 0.66 0.870833
Target:  5'- aGGUCGAGCGcgGCCUGCGaUAccuGgGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGGCGUaGU---UgCG- -5'
26483 3' -50.3 NC_005357.1 + 8830 0.66 0.870833
Target:  5'- gGGUCGGGCca-GCCgcaaCGCGggcCAGCGCg -3'
miRNA:   3'- gUCAGCUUGuaaCGG----GCGUa--GUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 42038 0.67 0.862353
Target:  5'- aCAGUCGcGCGcUGgCCGCGcUCAAUcgGCa -3'
miRNA:   3'- -GUCAGCuUGUaACgGGCGU-AGUUG--CG- -5'
26483 3' -50.3 NC_005357.1 + 20472 0.67 0.853605
Target:  5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3'
miRNA:   3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5'
26483 3' -50.3 NC_005357.1 + 32831 0.67 0.853605
Target:  5'- -cGUCGAACucacGCCCGaggugcgCAACGUg -3'
miRNA:   3'- guCAGCUUGuaa-CGGGCgua----GUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 20275 0.67 0.848232
Target:  5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3'
miRNA:   3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5'
26483 3' -50.3 NC_005357.1 + 2272 0.67 0.844599
Target:  5'- -uGUCGAucaucgcguACAgUGCCgCGCgGUCGAUGCu -3'
miRNA:   3'- guCAGCU---------UGUaACGG-GCG-UAGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.