miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26484 5' -55.6 NC_005357.1 + 1001 0.68 0.479743
Target:  5'- cCGCUGcCcGCGCCAcUGGCCgGGAa -3'
miRNA:   3'- aGUGACuGcCGCGGUaACUGGaCCUg -5'
26484 5' -55.6 NC_005357.1 + 2841 0.67 0.517857
Target:  5'- aCGCgcaGCGGCGCCAgcaccagcgaggGGCCUGGu- -3'
miRNA:   3'- aGUGac-UGCCGCGGUaa----------CUGGACCug -5'
26484 5' -55.6 NC_005357.1 + 4508 0.76 0.143701
Target:  5'- cUCACgGGCGGCGCCcgUgaacguggcGugCUGGGCg -3'
miRNA:   3'- -AGUGaCUGCCGCGGuaA---------CugGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 7302 0.68 0.490198
Target:  5'- cUCGCgGAUGGCGCCGUcgaUGGUCUGcGAa -3'
miRNA:   3'- -AGUGaCUGCCGCGGUA---ACUGGAC-CUg -5'
26484 5' -55.6 NC_005357.1 + 7554 0.73 0.255426
Target:  5'- cUCGauccGCGGCGCCAccGGCUUGGACa -3'
miRNA:   3'- -AGUgac-UGCCGCGGUaaCUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 8451 0.66 0.633153
Target:  5'- gCGCgaUGuCGGCGUCGaggUGGCCUGcGAUg -3'
miRNA:   3'- aGUG--ACuGCCGCGGUa--ACUGGAC-CUG- -5'
26484 5' -55.6 NC_005357.1 + 9317 0.66 0.633153
Target:  5'- aC-CUGGCGGCGCaCGUcGGCgCggcGGGCg -3'
miRNA:   3'- aGuGACUGCCGCG-GUAaCUG-Ga--CCUG- -5'
26484 5' -55.6 NC_005357.1 + 10078 0.71 0.338304
Target:  5'- ----cGGCGGCGaCCGcagcGACCUGGGCg -3'
miRNA:   3'- agugaCUGCCGC-GGUaa--CUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 11836 0.73 0.255426
Target:  5'- -gACcGGCcGCGCCgcgGUUGGCCUGGGCg -3'
miRNA:   3'- agUGaCUGcCGCGG---UAACUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 12920 0.71 0.313901
Target:  5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3'
miRNA:   3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5'
26484 5' -55.6 NC_005357.1 + 13373 0.67 0.543924
Target:  5'- cCGCUGAUGGCcuacgagccGCCGguggguaucGACCUGGcCg -3'
miRNA:   3'- aGUGACUGCCG---------CGGUaa-------CUGGACCuG- -5'
26484 5' -55.6 NC_005357.1 + 13467 0.69 0.439074
Target:  5'- -gGC--GCGGUGUCGggcaUGACCUGGGCg -3'
miRNA:   3'- agUGacUGCCGCGGUa---ACUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 14211 0.68 0.459169
Target:  5'- gCGCgugGucguCGGCGUgGccGACCUGGACa -3'
miRNA:   3'- aGUGa--Cu---GCCGCGgUaaCUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 14318 0.66 0.577077
Target:  5'- -aACUGGCGcGCGCC-UUGGCUgaacugccGGGCc -3'
miRNA:   3'- agUGACUGC-CGCGGuAACUGGa-------CCUG- -5'
26484 5' -55.6 NC_005357.1 + 14976 0.67 0.533006
Target:  5'- gCGCUGGCauaccaGCGCCAg-GGCCUGcGGCc -3'
miRNA:   3'- aGUGACUGc-----CGCGGUaaCUGGAC-CUG- -5'
26484 5' -55.6 NC_005357.1 + 16599 0.66 0.610655
Target:  5'- -aACUGAcCGGCGCCAacggcGGCCcGGuGCa -3'
miRNA:   3'- agUGACU-GCCGCGGUaa---CUGGaCC-UG- -5'
26484 5' -55.6 NC_005357.1 + 16814 0.67 0.543924
Target:  5'- -uGCUGGCGaccGCGCCGccgUGguugccacuGCCUGGGCc -3'
miRNA:   3'- agUGACUGC---CGCGGUa--AC---------UGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 17658 0.69 0.429217
Target:  5'- cCACgaucuUGAUGGCGUCGgcGGgCUGGGCg -3'
miRNA:   3'- aGUG-----ACUGCCGCGGUaaCUgGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 17736 0.66 0.621899
Target:  5'- gCACcGAUGGacaGCCug-GGCgUGGACg -3'
miRNA:   3'- aGUGaCUGCCg--CGGuaaCUGgACCUG- -5'
26484 5' -55.6 NC_005357.1 + 18157 0.67 0.565967
Target:  5'- gUCACUGucCGGCGCCAcgcucaaggUGgcaaGCCgcgaGGACa -3'
miRNA:   3'- -AGUGACu-GCCGCGGUa--------AC----UGGa---CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.