Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26484 | 5' | -55.6 | NC_005357.1 | + | 18580 | 0.69 | 0.449059 |
Target: 5'- cUCGCggUGACGGCcugGCCGUccgaGACUUGGAg -3' miRNA: 3'- -AGUG--ACUGCCG---CGGUAa---CUGGACCUg -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 18717 | 0.66 | 0.577077 |
Target: 5'- gCACUGGCccgcgaccugGGCGCUAccGGCCUGuACg -3' miRNA: 3'- aGUGACUG----------CCGCGGUaaCUGGACcUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 19327 | 0.71 | 0.338304 |
Target: 5'- gUCGCcGugGGCGCCGccgUUGGCgucgGGGCg -3' miRNA: 3'- -AGUGaCugCCGCGGU---AACUGga--CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 20169 | 0.69 | 0.449059 |
Target: 5'- uUCGCUGACGGCcggcgaauacGCCAUcgcGGCCgacaaccaGGGCc -3' miRNA: 3'- -AGUGACUGCCG----------CGGUAa--CUGGa-------CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 24267 | 0.66 | 0.621899 |
Target: 5'- cCACcuUGAgcgUGGCGCCGgacagUGACCacguggGGGCg -3' miRNA: 3'- aGUG--ACU---GCCGCGGUa----ACUGGa-----CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 24996 | 0.68 | 0.45511 |
Target: 5'- -uGCUGGCGGgGCCAcugcucaagggcGACgUGGGCg -3' miRNA: 3'- agUGACUGCCgCGGUaa----------CUGgACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 25143 | 0.66 | 0.633153 |
Target: 5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3' miRNA: 3'- aGUGacUGCCGCGGUaacuGgACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 26868 | 1.11 | 0.000464 |
Target: 5'- gUCACUGACGGCGCCAUUGACCUGGACg -3' miRNA: 3'- -AGUGACUGCCGCGGUAACUGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 26887 | 0.7 | 0.355323 |
Target: 5'- -gGCUGACGGCaGUg--UGACCUuGGGCa -3' miRNA: 3'- agUGACUGCCG-CGguaACUGGA-CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 27589 | 0.68 | 0.500758 |
Target: 5'- gCGCUGGC--CGCCAacggcaucGACCUGGGCg -3' miRNA: 3'- aGUGACUGccGCGGUaa------CUGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 27592 | 0.69 | 0.4099 |
Target: 5'- -aGCaGGCGGCGCCAgaUGGCgUGGuCg -3' miRNA: 3'- agUGaCUGCCGCGGUa-ACUGgACCuG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 27891 | 0.7 | 0.391133 |
Target: 5'- gUCGCUGuugucCGGCGCCGgcGACgUGG-Cu -3' miRNA: 3'- -AGUGACu----GCCGCGGUaaCUGgACCuG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 30372 | 0.68 | 0.500758 |
Target: 5'- aCACcauCGGCGCCAUcGACUucgacacgcUGGGCa -3' miRNA: 3'- aGUGacuGCCGCGGUAaCUGG---------ACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 30830 | 0.68 | 0.46837 |
Target: 5'- gCACUGcugcccgGCGGCcaGCCGgcGGcCCUGGGCg -3' miRNA: 3'- aGUGAC-------UGCCG--CGGUaaCU-GGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 34239 | 0.67 | 0.511417 |
Target: 5'- gUCGCUGACgaacgggcaGGaCGCCAgcgccuuCCUGGGCc -3' miRNA: 3'- -AGUGACUG---------CC-GCGGUaacu---GGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 34532 | 0.66 | 0.621899 |
Target: 5'- -aGCUGGCGaucuacgcacGCGCCGc---CCUGGACg -3' miRNA: 3'- agUGACUGC----------CGCGGUaacuGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 35241 | 0.67 | 0.531919 |
Target: 5'- gCGCUGucccggcugcgucAgGGCGUCAgcgcgucgGGCCUGGGCu -3' miRNA: 3'- aGUGAC-------------UgCCGCGGUaa------CUGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 36036 | 0.69 | 0.449059 |
Target: 5'- aUCACcGAgGGCGCCGcggcggccGACCUGGu- -3' miRNA: 3'- -AGUGaCUgCCGCGGUaa------CUGGACCug -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 37315 | 0.66 | 0.577077 |
Target: 5'- uUCA---ACGGCGCCAgccgcaccgGACgCUGGGCc -3' miRNA: 3'- -AGUgacUGCCGCGGUaa-------CUG-GACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 38865 | 0.73 | 0.229696 |
Target: 5'- gUCGCUGaaauuuauGCGGCGCgGUUGGCg-GGACu -3' miRNA: 3'- -AGUGAC--------UGCCGCGgUAACUGgaCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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