miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26484 5' -55.6 NC_005357.1 + 14976 0.67 0.533006
Target:  5'- gCGCUGGCauaccaGCGCCAg-GGCCUGcGGCc -3'
miRNA:   3'- aGUGACUGc-----CGCGGUaaCUGGAC-CUG- -5'
26484 5' -55.6 NC_005357.1 + 16814 0.67 0.543924
Target:  5'- -uGCUGGCGaccGCGCCGccgUGguugccacuGCCUGGGCc -3'
miRNA:   3'- agUGACUGC---CGCGGUa--AC---------UGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 13373 0.67 0.543924
Target:  5'- cCGCUGAUGGCcuacgagccGCCGguggguaucGACCUGGcCg -3'
miRNA:   3'- aGUGACUGCCG---------CGGUaa-------CUGGACCuG- -5'
26484 5' -55.6 NC_005357.1 + 18157 0.67 0.565967
Target:  5'- gUCACUGucCGGCGCCAcgcucaaggUGgcaaGCCgcgaGGACa -3'
miRNA:   3'- -AGUGACu-GCCGCGGUa--------AC----UGGa---CCUG- -5'
26484 5' -55.6 NC_005357.1 + 18717 0.66 0.577077
Target:  5'- gCACUGGCccgcgaccugGGCGCUAccGGCCUGuACg -3'
miRNA:   3'- aGUGACUG----------CCGCGGUaaCUGGACcUG- -5'
26484 5' -55.6 NC_005357.1 + 16599 0.66 0.610655
Target:  5'- -aACUGAcCGGCGCCAacggcGGCCcGGuGCa -3'
miRNA:   3'- agUGACU-GCCGCGGUaa---CUGGaCC-UG- -5'
26484 5' -55.6 NC_005357.1 + 17736 0.66 0.621899
Target:  5'- gCACcGAUGGacaGCCug-GGCgUGGACg -3'
miRNA:   3'- aGUGaCUGCCg--CGGuaaCUGgACCUG- -5'
26484 5' -55.6 NC_005357.1 + 8451 0.66 0.633153
Target:  5'- gCGCgaUGuCGGCGUCGaggUGGCCUGcGAUg -3'
miRNA:   3'- aGUG--ACuGCCGCGGUa--ACUGGAC-CUG- -5'
26484 5' -55.6 NC_005357.1 + 27589 0.68 0.500758
Target:  5'- gCGCUGGC--CGCCAacggcaucGACCUGGGCg -3'
miRNA:   3'- aGUGACUGccGCGGUaa------CUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 30372 0.68 0.500758
Target:  5'- aCACcauCGGCGCCAUcGACUucgacacgcUGGGCa -3'
miRNA:   3'- aGUGacuGCCGCGGUAaCUGG---------ACCUG- -5'
26484 5' -55.6 NC_005357.1 + 7554 0.73 0.255426
Target:  5'- cUCGauccGCGGCGCCAccGGCUUGGACa -3'
miRNA:   3'- -AGUgac-UGCCGCGGUaaCUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 12920 0.71 0.313901
Target:  5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3'
miRNA:   3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5'
26484 5' -55.6 NC_005357.1 + 19327 0.71 0.338304
Target:  5'- gUCGCcGugGGCGCCGccgUUGGCgucgGGGCg -3'
miRNA:   3'- -AGUGaCugCCGCGGU---AACUGga--CCUG- -5'
26484 5' -55.6 NC_005357.1 + 10078 0.71 0.338304
Target:  5'- ----cGGCGGCGaCCGcagcGACCUGGGCg -3'
miRNA:   3'- agugaCUGCCGC-GGUaa--CUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 27891 0.7 0.391133
Target:  5'- gUCGCUGuugucCGGCGCCGgcGACgUGG-Cu -3'
miRNA:   3'- -AGUGACu----GCCGCGGUaaCUGgACCuG- -5'
26484 5' -55.6 NC_005357.1 + 20169 0.69 0.449059
Target:  5'- uUCGCUGACGGCcggcgaauacGCCAUcgcGGCCgacaaccaGGGCc -3'
miRNA:   3'- -AGUGACUGCCG----------CGGUAa--CUGGa-------CCUG- -5'
26484 5' -55.6 NC_005357.1 + 24996 0.68 0.45511
Target:  5'- -uGCUGGCGGgGCCAcugcucaagggcGACgUGGGCg -3'
miRNA:   3'- agUGACUGCCgCGGUaa----------CUGgACCUG- -5'
26484 5' -55.6 NC_005357.1 + 14211 0.68 0.459169
Target:  5'- gCGCgugGucguCGGCGUgGccGACCUGGACa -3'
miRNA:   3'- aGUGa--Cu---GCCGCGgUaaCUGGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 30830 0.68 0.46837
Target:  5'- gCACUGcugcccgGCGGCcaGCCGgcGGcCCUGGGCg -3'
miRNA:   3'- aGUGAC-------UGCCG--CGGUaaCU-GGACCUG- -5'
26484 5' -55.6 NC_005357.1 + 1001 0.68 0.479743
Target:  5'- cCGCUGcCcGCGCCAcUGGCCgGGAa -3'
miRNA:   3'- aGUGACuGcCGCGGUaACUGGaCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.