Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26484 | 5' | -55.6 | NC_005357.1 | + | 4508 | 0.76 | 0.143701 |
Target: 5'- cUCACgGGCGGCGCCcgUgaacguggcGugCUGGGCg -3' miRNA: 3'- -AGUGaCUGCCGCGGuaA---------CugGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 9317 | 0.66 | 0.633153 |
Target: 5'- aC-CUGGCGGCGCaCGUcGGCgCggcGGGCg -3' miRNA: 3'- aGuGACUGCCGCG-GUAaCUG-Ga--CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 24267 | 0.66 | 0.621899 |
Target: 5'- cCACcuUGAgcgUGGCGCCGgacagUGACCacguggGGGCg -3' miRNA: 3'- aGUG--ACU---GCCGCGGUa----ACUGGa-----CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 34532 | 0.66 | 0.621899 |
Target: 5'- -aGCUGGCGaucuacgcacGCGCCGc---CCUGGACg -3' miRNA: 3'- agUGACUGC----------CGCGGUaacuGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 37315 | 0.66 | 0.577077 |
Target: 5'- uUCA---ACGGCGCCAgccgcaccgGACgCUGGGCc -3' miRNA: 3'- -AGUgacUGCCGCGGUaa-------CUG-GACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 14318 | 0.66 | 0.577077 |
Target: 5'- -aACUGGCGcGCGCC-UUGGCUgaacugccGGGCc -3' miRNA: 3'- agUGACUGC-CGCGGuAACUGGa-------CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 42314 | 0.67 | 0.543924 |
Target: 5'- aCGCgaagugguugGACGGCGCgCAgaacGAUCUGGAa -3' miRNA: 3'- aGUGa---------CUGCCGCG-GUaa--CUGGACCUg -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 34239 | 0.67 | 0.511417 |
Target: 5'- gUCGCUGACgaacgggcaGGaCGCCAgcgccuuCCUGGGCc -3' miRNA: 3'- -AGUGACUG---------CC-GCGGUaacu---GGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 7302 | 0.68 | 0.490198 |
Target: 5'- cUCGCgGAUGGCGCCGUcgaUGGUCUGcGAa -3' miRNA: 3'- -AGUGaCUGCCGCGGUA---ACUGGAC-CUg -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 36036 | 0.69 | 0.449059 |
Target: 5'- aUCACcGAgGGCGCCGcggcggccGACCUGGu- -3' miRNA: 3'- -AGUGaCUgCCGCGGUaa------CUGGACCug -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 38865 | 0.73 | 0.229696 |
Target: 5'- gUCGCUGaaauuuauGCGGCGCgGUUGGCg-GGACu -3' miRNA: 3'- -AGUGAC--------UGCCGCGgUAACUGgaCCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 11836 | 0.73 | 0.255426 |
Target: 5'- -gACcGGCcGCGCCgcgGUUGGCCUGGGCg -3' miRNA: 3'- agUGaCUGcCGCGG---UAACUGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 26887 | 0.7 | 0.355323 |
Target: 5'- -gGCUGACGGCaGUg--UGACCUuGGGCa -3' miRNA: 3'- agUGACUGCCG-CGguaACUGGA-CCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 27592 | 0.69 | 0.4099 |
Target: 5'- -aGCaGGCGGCGCCAgaUGGCgUGGuCg -3' miRNA: 3'- agUGaCUGCCGCGGUa-ACUGgACCuG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 17658 | 0.69 | 0.429217 |
Target: 5'- cCACgaucuUGAUGGCGUCGgcGGgCUGGGCg -3' miRNA: 3'- aGUG-----ACUGCCGCGGUaaCUgGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 13467 | 0.69 | 0.439074 |
Target: 5'- -gGC--GCGGUGUCGggcaUGACCUGGGCg -3' miRNA: 3'- agUGacUGCCGCGGUa---ACUGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 18580 | 0.69 | 0.449059 |
Target: 5'- cUCGCggUGACGGCcugGCCGUccgaGACUUGGAg -3' miRNA: 3'- -AGUG--ACUGCCG---CGGUAa---CUGGACCUg -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 25143 | 0.66 | 0.633153 |
Target: 5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3' miRNA: 3'- aGUGacUGCCGCGGUaacuGgACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 7554 | 0.73 | 0.255426 |
Target: 5'- cUCGauccGCGGCGCCAccGGCUUGGACa -3' miRNA: 3'- -AGUgac-UGCCGCGGUaaCUGGACCUG- -5' |
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26484 | 5' | -55.6 | NC_005357.1 | + | 12920 | 0.71 | 0.313901 |
Target: 5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3' miRNA: 3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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