miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26485 3' -54.6 NC_005357.1 + 26379 1.11 0.000544
Target:  5'- gGCCACGUGCGCGAACUGGCCUACAACu -3'
miRNA:   3'- -CGGUGCACGCGCUUGACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 17748 0.79 0.115131
Target:  5'- aGCCugG-GCGUGGACgUGGCCcGCGGCg -3'
miRNA:   3'- -CGGugCaCGCGCUUG-ACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 37111 0.76 0.197059
Target:  5'- cGCCACGUGCuCGc---GGCCUACGGCc -3'
miRNA:   3'- -CGGUGCACGcGCuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 25627 0.75 0.202547
Target:  5'- cGCCugG-GCGCGAccaACUGGCaacugGCGACc -3'
miRNA:   3'- -CGGugCaCGCGCU---UGACCGga---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 13864 0.75 0.208167
Target:  5'- gGCCgACGUGCGCGccgcgaUGGCCgGCGGCc -3'
miRNA:   3'- -CGG-UGCACGCGCuug---ACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 5198 0.75 0.213922
Target:  5'- -gCugGUGCugGUGGuGCUGGCCUGCAACc -3'
miRNA:   3'- cgGugCACG--CGCU-UGACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 27576 0.74 0.238317
Target:  5'- cGCCcaGCGUGCG-GcGCUGGCCgcCAACg -3'
miRNA:   3'- -CGG--UGCACGCgCuUGACCGGauGUUG- -5'
26485 3' -54.6 NC_005357.1 + 32641 0.74 0.238317
Target:  5'- uCgGCGUGCGCGAcCUGGCCgcgUGgAACg -3'
miRNA:   3'- cGgUGCACGCGCUuGACCGG---AUgUUG- -5'
26485 3' -54.6 NC_005357.1 + 4801 0.74 0.251365
Target:  5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3'
miRNA:   3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 8452 0.74 0.251365
Target:  5'- cGCgAUGUcgGCGuCGAGgUGGCCUGCGAUg -3'
miRNA:   3'- -CGgUGCA--CGC-GCUUgACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 41287 0.73 0.271323
Target:  5'- cGCCGcCGUaGCGCGAGCUaacgguuacaccgGGCCgaugcGCGACa -3'
miRNA:   3'- -CGGU-GCA-CGCGCUUGA-------------CCGGa----UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 39583 0.73 0.272033
Target:  5'- cGCUACG-GCuugGCGGGCUGGCCUuuccuCAAUa -3'
miRNA:   3'- -CGGUGCaCG---CGCUUGACCGGAu----GUUG- -5'
26485 3' -54.6 NC_005357.1 + 12512 0.73 0.300914
Target:  5'- cCCACGgcacugaUGCGCGAACUGGU--ACGGCc -3'
miRNA:   3'- cGGUGC-------ACGCGCUUGACCGgaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 10720 0.73 0.301685
Target:  5'- cCCGCGcGCgGCGGGCUGGUcaggcggugCUGCAGCa -3'
miRNA:   3'- cGGUGCaCG-CGCUUGACCG---------GAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 31048 0.72 0.323073
Target:  5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3'
miRNA:   3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5'
26485 3' -54.6 NC_005357.1 + 2348 0.72 0.333768
Target:  5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3'
miRNA:   3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5'
26485 3' -54.6 NC_005357.1 + 30418 0.71 0.350722
Target:  5'- gGCCACGgccGCGCu-GCUGGCCgACGu- -3'
miRNA:   3'- -CGGUGCa--CGCGcuUGACCGGaUGUug -5'
26485 3' -54.6 NC_005357.1 + 5620 0.71 0.386431
Target:  5'- aGCCACG-GCgucgauguugGCGAGgUGGCCguacACGGCg -3'
miRNA:   3'- -CGGUGCaCG----------CGCUUgACCGGa---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 8873 0.7 0.434306
Target:  5'- cGCCACGaagcggGCGCGGGCaucauugugaaUGGCgCUAuCGGCg -3'
miRNA:   3'- -CGGUGCa-----CGCGCUUG-----------ACCG-GAU-GUUG- -5'
26485 3' -54.6 NC_005357.1 + 36883 0.7 0.443284
Target:  5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3'
miRNA:   3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.