Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26485 | 3' | -54.6 | NC_005357.1 | + | 25616 | 0.66 | 0.662815 |
Target: 5'- aCCACGgcgGCGCGGuc--GCCaGCAGCg -3' miRNA: 3'- cGGUGCa--CGCGCUugacCGGaUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 19483 | 0.68 | 0.53928 |
Target: 5'- cGCCAgGUGCcgGUGGGCaGGCCgcUGCGAa -3' miRNA: 3'- -CGGUgCACG--CGCUUGaCCGG--AUGUUg -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 23291 | 0.68 | 0.561394 |
Target: 5'- cGCCACGaaugccuguuUGCGgcCGGcACUGGCCgggAUGACg -3' miRNA: 3'- -CGGUGC----------ACGC--GCU-UGACCGGa--UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 38593 | 0.68 | 0.561394 |
Target: 5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3' miRNA: 3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 39492 | 0.67 | 0.583749 |
Target: 5'- uGCCGCGcGaCGCGGugUgGGCCgGCAu- -3' miRNA: 3'- -CGGUGCaC-GCGCUugA-CCGGaUGUug -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 26333 | 0.67 | 0.628892 |
Target: 5'- -aCGCGcacCGCGAACUGGCCgcGCcGCu -3' miRNA: 3'- cgGUGCac-GCGCUUGACCGGa-UGuUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 39600 | 0.66 | 0.640211 |
Target: 5'- cGCCgcugcGCGUGgcCGCGAGCaccUGGCCcgACGAa -3' miRNA: 3'- -CGG-----UGCAC--GCGCUUG---ACCGGa-UGUUg -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 42022 | 0.66 | 0.640211 |
Target: 5'- cGCgACGUGCugcucaacagucGCGcGCUGGCCgcgcuCAAUc -3' miRNA: 3'- -CGgUGCACG------------CGCuUGACCGGau---GUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 25194 | 0.66 | 0.651522 |
Target: 5'- uGUCAUGagcacGCGCGAccGCUGGCC--CGGCu -3' miRNA: 3'- -CGGUGCa----CGCGCU--UGACCGGauGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 28565 | 0.68 | 0.517469 |
Target: 5'- gGCCAuCGcgGCGCGcACgucGGCCaccgGCAGCg -3' miRNA: 3'- -CGGU-GCa-CGCGCuUGa--CCGGa---UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 21180 | 0.68 | 0.517469 |
Target: 5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3' miRNA: 3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 11584 | 0.69 | 0.496019 |
Target: 5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3' miRNA: 3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 4801 | 0.74 | 0.251365 |
Target: 5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3' miRNA: 3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 31048 | 0.72 | 0.323073 |
Target: 5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3' miRNA: 3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 2348 | 0.72 | 0.333768 |
Target: 5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3' miRNA: 3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 5620 | 0.71 | 0.386431 |
Target: 5'- aGCCACG-GCgucgauguugGCGAGgUGGCCguacACGGCg -3' miRNA: 3'- -CGGUGCaCG----------CGCUUgACCGGa---UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 8873 | 0.7 | 0.434306 |
Target: 5'- cGCCACGaagcggGCGCGGGCaucauugugaaUGGCgCUAuCGGCg -3' miRNA: 3'- -CGGUGCa-----CGCGCUUG-----------ACCG-GAU-GUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 36883 | 0.7 | 0.443284 |
Target: 5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3' miRNA: 3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 20316 | 0.69 | 0.47498 |
Target: 5'- gGCCGguUGCgauGCGGGCUGGCCUucaguggucguuGCGGCu -3' miRNA: 3'- -CGGUgcACG---CGCUUGACCGGA------------UGUUG- -5' |
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26485 | 3' | -54.6 | NC_005357.1 | + | 35932 | 0.69 | 0.47498 |
Target: 5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3' miRNA: 3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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