miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26485 3' -54.6 NC_005357.1 + 608 0.68 0.53928
Target:  5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3'
miRNA:   3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5'
26485 3' -54.6 NC_005357.1 + 2348 0.72 0.333768
Target:  5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3'
miRNA:   3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5'
26485 3' -54.6 NC_005357.1 + 2575 0.69 0.484394
Target:  5'- gGCCcagcGCGUGCGCGcGCUuGCCgcccuguUGCAACc -3'
miRNA:   3'- -CGG----UGCACGCGCuUGAcCGG-------AUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 4044 0.66 0.685297
Target:  5'- gGCCGCG---GCGAGCggcaGGCCaGCGGCc -3'
miRNA:   3'- -CGGUGCacgCGCUUGa---CCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 4801 0.74 0.251365
Target:  5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3'
miRNA:   3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 5105 0.66 0.662815
Target:  5'- gGCCcaGCGUccgGUGCG-GCUGGCgccguugaaCUGCAACg -3'
miRNA:   3'- -CGG--UGCA---CGCGCuUGACCG---------GAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 5198 0.75 0.213922
Target:  5'- -gCugGUGCugGUGGuGCUGGCCUGCAACc -3'
miRNA:   3'- cgGugCACG--CGCU-UGACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 5620 0.71 0.386431
Target:  5'- aGCCACG-GCgucgauguugGCGAGgUGGCCguacACGGCg -3'
miRNA:   3'- -CGGUGCaCG----------CGCUUgACCGGa---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 7243 0.69 0.506695
Target:  5'- gGCCACuG-GCGCGGGCcgaugucgccGGCCUuguGCAGCu -3'
miRNA:   3'- -CGGUG-CaCGCGCUUGa---------CCGGA---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 8452 0.74 0.251365
Target:  5'- cGCgAUGUcgGCGuCGAGgUGGCCUGCGAUg -3'
miRNA:   3'- -CGgUGCA--CGC-GCUUgACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 8873 0.7 0.434306
Target:  5'- cGCCACGaagcggGCGCGGGCaucauugugaaUGGCgCUAuCGGCg -3'
miRNA:   3'- -CGGUGCa-----CGCGCUUG-----------ACCG-GAU-GUUG- -5'
26485 3' -54.6 NC_005357.1 + 9921 0.67 0.594994
Target:  5'- aGCCugcACGgGCGCGGAguuCUcGGCCUugGAUu -3'
miRNA:   3'- -CGG---UGCaCGCGCUU---GA-CCGGAugUUG- -5'
26485 3' -54.6 NC_005357.1 + 10720 0.73 0.301685
Target:  5'- cCCGCGcGCgGCGGGCUGGUcaggcggugCUGCAGCa -3'
miRNA:   3'- cGGUGCaCG-CGCUUGACCG---------GAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 11584 0.69 0.496019
Target:  5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3'
miRNA:   3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 12214 0.69 0.464629
Target:  5'- cGCCgaguGCGUGCGCGuGCUcaaGCCcgGCGGCu -3'
miRNA:   3'- -CGG----UGCACGCGCuUGAc--CGGa-UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 12512 0.73 0.300914
Target:  5'- cCCACGgcacugaUGCGCGAACUGGU--ACGGCc -3'
miRNA:   3'- cGGUGC-------ACGCGCUUGACCGgaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 13003 0.68 0.565848
Target:  5'- cGCgACGUGCgagcgcgugggcaacGCGcccaagauucuGCUGGCCUACcGCg -3'
miRNA:   3'- -CGgUGCACG---------------CGCu----------UGACCGGAUGuUG- -5'
26485 3' -54.6 NC_005357.1 + 13078 0.67 0.594994
Target:  5'- gGCCAcCG-GCGCGugguucgagGACuUGGCCgGCGACc -3'
miRNA:   3'- -CGGU-GCaCGCGC---------UUG-ACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 13864 0.75 0.208167
Target:  5'- gGCCgACGUGCGCGccgcgaUGGCCgGCGGCc -3'
miRNA:   3'- -CGG-UGCACGCGCuug---ACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 14967 0.68 0.561394
Target:  5'- cGUgGCG-GCGCGcuggcauaccAGCgccagGGCCUGCGGCc -3'
miRNA:   3'- -CGgUGCaCGCGC----------UUGa----CCGGAUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.