miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 42221 0.72 0.328432
Target:  5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3'
miRNA:   3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5'
26487 3' -54.5 NC_005357.1 + 41801 0.71 0.398686
Target:  5'- uCGACGCCGgaCGCCGUGUCcacggcGCUGCu -3'
miRNA:   3'- -GUUGCGGUagGCGGUAUAGca----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 41698 0.68 0.552962
Target:  5'- ---gGUCAUCCGCCAggcgcUCGacuugGCCGUg -3'
miRNA:   3'- guugCGGUAGGCGGUau---AGCa----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 38618 0.68 0.575121
Target:  5'- aCGGCGCCcccgaCCGCCugGUCaUGCUGCc -3'
miRNA:   3'- -GUUGCGGua---GGCGGuaUAGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 38254 0.66 0.709446
Target:  5'- --cCGCCAUCgaggcgGCCGgcuaccagAUCGUGCUGUc -3'
miRNA:   3'- guuGCGGUAGg-----CGGUa-------UAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 37920 0.71 0.40812
Target:  5'- -uGCGCCAagCGCC-UGUgGcGCCGCg -3'
miRNA:   3'- guUGCGGUagGCGGuAUAgCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 37097 0.68 0.552962
Target:  5'- gCGAUGCCAugcUgCGCCA---CGUGCuCGCg -3'
miRNA:   3'- -GUUGCGGU---AgGCGGUauaGCACG-GCG- -5'
26487 3' -54.5 NC_005357.1 + 36617 0.7 0.43724
Target:  5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3'
miRNA:   3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 35986 0.71 0.40812
Target:  5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3'
miRNA:   3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 35134 0.67 0.631215
Target:  5'- aCGGCGCCAUCCGCgAgcacuaCG-GCCcCg -3'
miRNA:   3'- -GUUGCGGUAGGCGgUaua---GCaCGGcG- -5'
26487 3' -54.5 NC_005357.1 + 34697 0.66 0.698414
Target:  5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3'
miRNA:   3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 34425 0.66 0.66496
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 34257 0.67 0.619954
Target:  5'- gGACGCCAg-CGCCu--UCcuggGCCGCa -3'
miRNA:   3'- gUUGCGGUagGCGGuauAGca--CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 33834 0.8 0.110413
Target:  5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3'
miRNA:   3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 33249 0.66 0.676159
Target:  5'- cCAACGUCGacggCGCCAaguUGUCGcUGCCGg -3'
miRNA:   3'- -GUUGCGGUag--GCGGU---AUAGC-ACGGCg -5'
26487 3' -54.5 NC_005357.1 + 32547 0.71 0.417692
Target:  5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 32067 0.73 0.28203
Target:  5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3'
miRNA:   3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 31496 0.66 0.676159
Target:  5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3'
miRNA:   3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 30195 0.68 0.564013
Target:  5'- uCGAUGCCGcugUUGCCGg--UGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUa--GGCGGUauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 29557 0.67 0.631215
Target:  5'- -cACGCCGugcucgggguaUCgCGUCAgGUCG-GCCGCg -3'
miRNA:   3'- guUGCGGU-----------AG-GCGGUaUAGCaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.