miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 8997 0.74 0.322496
Target:  5'- ---cGCCgcgcgggGGCGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- gaaaCGG-------CCGUGAuGGUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 17799 0.74 0.340161
Target:  5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 657 0.73 0.348816
Target:  5'- --gUGCCcaaGGCugUaGCCAcCAGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGugA-UGGUuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20178 0.73 0.348816
Target:  5'- ---gGCCGGCgaauacgccaucGCgGCCGACAaccagGGCCGCg -3'
miRNA:   3'- gaaaCGGCCG------------UGaUGGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14977 0.73 0.357627
Target:  5'- ---cGCUGGCA-UACCAGCGccagggccugcGGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-----------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18161 0.73 0.394406
Target:  5'- --cUGuCCGGCGCcacGCUcaagguGGCAAGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGa--UGG------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41698 0.73 0.394406
Target:  5'- ---gGCCGGCGUUGUCGGCaAAGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUGGUUG-UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13856 0.73 0.394406
Target:  5'- --cUGCCGGUg--GCCGACGugcgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGugaUGGUUGUu----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 21120 0.73 0.394406
Target:  5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3'
miRNA:   3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 16939 0.73 0.394406
Target:  5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 12564 0.72 0.403012
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39682 0.72 0.403012
Target:  5'- ---gGUCGGCACgcCCGAgcagcgcCGGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGauGGUU-------GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5014 0.72 0.403975
Target:  5'- -aUUGuuGGCAUUACCGACua-CUGCg -3'
miRNA:   3'- gaAACggCCGUGAUGGUUGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30825 0.72 0.403975
Target:  5'- ---cGCUGGCACUgcugcccggcgGCCAGCcGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUGA-----------UGGUUGuUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 25794 0.72 0.410761
Target:  5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3'
miRNA:   3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 16519 0.72 0.433545
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14601 0.72 0.433545
Target:  5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5'
26488 5' -52.6 NC_005357.1 + 33636 0.72 0.433545
Target:  5'- --cUGaCCGGCGCgGCCGACccaucgugcGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGaUGGUUGuu-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18279 0.72 0.433545
Target:  5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3'
miRNA:   3'- gaAACGGCCGuGaugGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 24203 0.72 0.442658
Target:  5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3'
miRNA:   3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.