miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 3' -56.2 NC_005357.1 + 25908 1.11 0.0004
Target:  5'- cGGCUAUAUCGGCCAGACCACCGGCACc -3'
miRNA:   3'- -CCGAUAUAGCCGGUCUGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 14930 0.83 0.049043
Target:  5'- aGCUGg--CGGCCgAGGCCGCCGGCAUc -3'
miRNA:   3'- cCGAUauaGCCGG-UCUGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 25300 0.8 0.074076
Target:  5'- aGGUcGUG-CGGCCGGcccuGCCACCGGCGCu -3'
miRNA:   3'- -CCGaUAUaGCCGGUC----UGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 13066 0.79 0.0857
Target:  5'- gGGCUGg---GGCaAGGCCACCGGCGCg -3'
miRNA:   3'- -CCGAUauagCCGgUCUGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33474 0.77 0.121059
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCGa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 33426 0.77 0.121059
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCGa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 32528 0.77 0.124553
Target:  5'- aGGCUGgugAUgcCGGCCAGgaugcuGCCGCCGGCGa -3'
miRNA:   3'- -CCGAUa--UA--GCCGGUC------UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 13755 0.76 0.1459
Target:  5'- uGGCgcgccgcgcUGGCgAGGCCGCCGGCACc -3'
miRNA:   3'- -CCGauaua----GCCGgUCUGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 17707 0.76 0.147546
Target:  5'- aGGCgcgGUGgaagCGGCCcGACCgACUGGCACc -3'
miRNA:   3'- -CCGa--UAUa---GCCGGuCUGG-UGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 23953 0.76 0.147546
Target:  5'- cGGUggacgaAUCGGCCGacGCCGCCGGCGCc -3'
miRNA:   3'- -CCGaua---UAGCCGGUc-UGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 18879 0.76 0.151312
Target:  5'- cGGCgAUGUCGGCCgAGGCCAUCGaccgcguGCGCc -3'
miRNA:   3'- -CCGaUAUAGCCGG-UCUGGUGGC-------CGUG- -5'
26489 3' -56.2 NC_005357.1 + 33210 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33258 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33306 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33354 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 29024 0.75 0.169126
Target:  5'- aGGCgccgcgcuUCGGCCAGGucgauacCCACCGGCGg -3'
miRNA:   3'- -CCGauau----AGCCGGUCU-------GGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 22937 0.74 0.194544
Target:  5'- cGGUUcgcagCGGCCu-GCCACCGGCACc -3'
miRNA:   3'- -CCGAuaua-GCCGGucUGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 19601 0.74 0.210445
Target:  5'- cGGCU--GUCGGCagcgcggcgaaguCGGGCCAguCCGGCACc -3'
miRNA:   3'- -CCGAuaUAGCCG-------------GUCUGGU--GGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 32005 0.74 0.213297
Target:  5'- aGCUGUuggaaaugaaaagUGGCgAGGCCAUCGGCGCg -3'
miRNA:   3'- cCGAUAua-----------GCCGgUCUGGUGGCCGUG- -5'
26489 3' -56.2 NC_005357.1 + 40657 0.73 0.228668
Target:  5'- ---cGUAUCGGCCcGACgCGCCaGGCGCa -3'
miRNA:   3'- ccgaUAUAGCCGGuCUG-GUGG-CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.